RNA id: TU85554


Basic Information

Item Value
RNA id TU85554
length 204
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G75001
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9639446 ~ 9639649 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATTTTGAGGGGGTTTTTGGCGCACAAAAAGTATTATCGTCCCTTTATAATATTAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTTTTTAGTACATTTTTGGACATCTGAAAGTGTTAATTATCTTGTTGGCAATAGAGGCCTCGCTGAGCCATCGGATTTCATCAAAAATATATTAATTTGTGTTCCGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85550 lncRNA downstream 2302 9636905 ~ 9637144 (-) True G74997
TU85549 lncRNA downstream 3048 9636147 ~ 9636398 (-) True G74996
TU85547 lncRNA downstream 7996 9631239 ~ 9631450 (-) True G74994
TU85534 lncRNA downstream 54276 9584874 ~ 9585170 (-) True G74986
TU85526 lncRNA downstream 63297 9575648 ~ 9576149 (-) False G74982
TU85557 lncRNA upstream 2061 9641710 ~ 9641944 (-) True G75004
TU85765 lncRNA upstream 126796 9766445 ~ 9769509 (-) True G75189
TU85789 lncRNA upstream 176329 9815978 ~ 9817036 (-) True G75212
TU85809 lncRNA upstream 347716 9987365 ~ 9987685 (-) True G75230
TU86324 lncRNA upstream 446302 10085951 ~ 10086261 (-) True G75645
CI01000012_09589749_09615649.mRNA mRNA downstream 23797 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09513757_09517777.mRNA mRNA downstream 121669 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09465977_09473475.mRNA mRNA downstream 165971 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 178158 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 237068 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09754856_09756772.mRNA mRNA upstream 114946 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 142961 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 148046 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
CI01000012_09830411_09851586.mRNA mRNA upstream 190516 9830165 ~ 9851870 (-) True CI01000012_09830411_09851586
CI01000012_09862141_09892366.mRNA mRNA upstream 222226 9861875 ~ 9892366 (-) True CI01000012_09862141_09892366
TU85530 other downstream 63474 9575648 ~ 9575972 (-) False G74982
TU85525 other downstream 63522 9575648 ~ 9575924 (-) False G74982
TU85327 other downstream 237478 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 555957 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 565989 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU86281 other upstream 972266 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 972266 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2409395 12049044 ~ 12049222 (-) True G76984
TU87842 other upstream 2439287 12080546 ~ 12080752 (-) False G77017
TU87843 other upstream 2439287 12080546 ~ 12083845 (-) True G77017

Expression Profile