RNA id: CI01000012_09419200_09460604.mRNA


Basic Information

Item Value
RNA id CI01000012_09419200_09460604.mRNA
length 2337
RNA type mRNA
GC content 0.45
exon number 14
gene id CI01000012_09419200_09460604
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9419095 ~ 9461288 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGATGCAGCCTTGTTCCGTTTCTAAAAGTGTTCTGAACGAATCAGTTGAATGAATGAGCAATGATTCACTCACAAAGAAAGTCTCTTGTCGCCACCTACTGGAGCATCGCTGTAACCTGCAGAAAGACCCCCACCACTAGGTCTGTGCATTCCCCCCACCCCACAAATTGTAAATAAATTGTTTGAGATTTGCATAATTTTAATTAGATCCCATATAAACAGAATAGATTATATAAAGAAGACTATGATGTTATCTATTTTTTTTTTTTAATTTTTCATGTAAGCTAATTTTTAAAAAAGGAGAAAATCAAATGAAATACTATCCTACATTTGTGTTAAGAAAATTCTAGTGATCTTGCGGAAATACTTTTAGTTAAAAAACGAATGGCAGGTAAAAGTGTGGGACATATTTTGTCTCATGGTTATTTTCTGTTCTCAGTGGTTATGGGCTAACTGACATTCTAAATGATTCTATAATGTGACGATAACTGAATTTAATGAAATTCAGAACGTGCATTCACTGACGAGCTTGATAGCAGCAGCTCTTCGCGTCTTCATCTCTCTCTCTCTCTCTCTCTCTCTCTATAGAGGGAAGACGCATCCTGTAATCAGGTCACACTTCACTGTAGTCTCAGCATCCGTCTCTCGTCCTTTAAAGCAGAGGAATCGAGACATCAGACAAAAATGGTGTGGATGAATGATCTGGGATGTCTTCTCGTCCCGTTGCTGATGCTCGTACGGGTTTCCGTGCAGGTGGACGTTAAGAGCGGGAAAGAAGCGGAGAAAACGGGGAATTTCATGGAAGATGAACAGTGGCTGTCCACCATTTCCCAGTACAGTCGCAAGATCAAGCACTGGAACCGCTTCAGAGATCTCGTGTCAATAACCGATGGTTTAGATTTGTTAGGAAGTGTTAGGAATGGTATGCTGGACTGTTATTCCTTAGACACCATTAGTCCTTCAACATTCCCAAAGAAATCAATCTTCCTTTTGAAAGCAGTTGCGTTTAAGATGATAAAAAGCTCTTGGTATATAATAGCCCGAATTGAGAGACTCAACAGGCTGGATTGTCCGAGGAGGAGGTCACGGGCCTGCGGGGCAGGGGAAATTGAGTGCGAGCTGTCAGTTGGTTCCTTAGAATCGTTGCTCCTCAGAGATGCATCGCTCTCCTCTAACTGTCTCCTTCTCTTTTGTCTTTGCTTCATCCTTCTCACATTTCACCAGGAAGTGGAGGATGATTACATCAGATCATGGGATGAAAATCAAGGCTCGAATGAAAATGTGGACACCACTAAAGATCCCTGCCAGAAGGTGAAATGCAGCCGACATAAGGTGTGTGTTGCCCAGGGCTACCAGCGCGCTGTGTGCGTCAACCGCAAGAAGCTGGAGCACAGGTTGAAGCAGCAGGTCATAAGACAGCAGCAGGAGAGTAACTGTAAGTCTTGCCCAGTGTCCTCCTCTGGTCCTGTTTGTGGCTCTGATGGACACAACTACGCCTCTCAGTGCAAACTGGAGCAGCAGGCTTGTCTCACTGGAAAGGAGTTGAAAATGAGATGTGCTGGTCTCTGCCCCTGCACCGCCACCATGGCTCCTGCTACAGACGTGGACAGCAAACATGAGAGTTGCACAGGGCAGGACCTGGCAGATCTGGGAGATCGCCTGCGGGACTGGTTCCAACTGCTCCAAGGCAACGGCAAGCAGAACAACACAGGGAATCCTGTAGCCAGTTCTGCATCAATTGTGGACCGGACTCTTGTTGCGACCTGTAAGGACTCTATTGGCTGGATGTTCTCTAAGCTGGACACAAACAATGACCTGTATCTGGACCAAGCTGAGCTGGCTGCCATTAATCTGGACAAGTATGAAGTGTGCATACGGCCCTTCTTCAACTCCTGTGATTCATACCGTGATGGCAAAGTTTCCACAGCGGAGTGGTGCCTCTGCTTTTGGAGAGAAAAGCCTCCCTGCCTGGCTGAGCTAGAGCGAATCCAAGTGCAAGAAGGAGCCAAGAAGAAACCGGATACATACATTCCCAGCTGTGATGAGGACGGCTTTTACAGGAGACTGCAGTGTGACAAGAGCAGAGGGGAGTGCTGGTGTGTGGACCAGCATGGAGGAGAGTTAATGGGCTCCAGAATCCATGGCAACCCCGACTGTGCACATATAAACACAGATTACAATAAAGACAAAGAGACGAAAATGCCAAAAACTCAAAGAGTTAAGTTAGCTTAGCTCAAAAAGCTAAGACTATTACTCTCTTTTGGCTCAAACAGTCGCTGCATCATTTTTATGCTACCCTGAAGTAGATAAATAGTCGTAAATGTCTTTTAAAATAAA

Function

GO:      GO:0005578, GO:0005509, GO:0007165

KEGG:

id description
K08136 SPOCK; testican

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85460 lncRNA downstream 78690 9340200 ~ 9340405 (-) True G74921
TU85326 lncRNA downstream 412305 9006633 ~ 9006790 (-) True G74792
TU85426 lncRNA downstream 424196 8994610 ~ 8994899 (-) True G74887
TU85424 lncRNA downstream 425675 8993221 ~ 8993420 (-) True G74885
TU85421 lncRNA downstream 427849 8991038 ~ 8991246 (-) True G74882
TU85358 lncRNA upstream 13016 9474304 ~ 9475994 (-) True G74824
TU85495 lncRNA upstream 25979 9487267 ~ 9487594 (-) True G74953
TU85496 lncRNA upstream 26582 9487870 ~ 9488107 (-) True G74954
TU85499 lncRNA upstream 29114 9490402 ~ 9490617 (-) True G74957
TU85497 lncRNA upstream 31764 9493052 ~ 9493918 (-) True G74955
CI01000012_09400481_09401810.mRNA mRNA downstream 16717 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 24045 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09358336_09370502.mRNA mRNA downstream 48475 9358098 ~ 9370620 (-) True CI01000012_09358336_09370502
CI01000012_09306970_09313413.mRNA mRNA downstream 103382 9306591 ~ 9315713 (-) True CI01000012_09306970_09313413
CI01000012_09164233_09178383.mRNA mRNA downstream 239827 9164101 ~ 9179268 (-) True CI01000012_09164233_09178383
CI01000012_09465977_09473475.mRNA mRNA upstream 4660 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09513757_09517777.mRNA mRNA upstream 51980 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09589749_09615649.mRNA mRNA upstream 127156 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 293307 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 321322 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
TU85327 other downstream 17127 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 335606 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 345638 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 348428 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 1051452 8367081 ~ 8367643 (-) True G74701
TU85525 other upstream 114360 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 114360 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1150627 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1150627 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2587756 12049044 ~ 12049222 (-) True G76984

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00011958 False 2282 mRNA 0.48 10 NC_007124.7 30054996 ~ 30132256 (+)