RNA id: TU85497


Basic Information

Item Value
RNA id TU85497
length 867
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G74955
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 9493052 ~ 9493918 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAATCGTGAATTCAAAACTCCTTTAAAAATGATCATTCCAATAAATTATCCATCAAAGTACATCACTGTCGGTGAATGAAAAGGTTATTCACAGTCTATTGTGCTATATATTGGTTAGATGCGTTGTTCAGTGCTATCTTACAATGTATACAGGAGTAATTTTGAAATGCTTAGGTGAAATAATACAGATCAAATACGCATTTAAAGTATCAGCTCTGGACATCTAGGTGTCCATTAAAGCATTCAGATGGACCTTTGAGCTCATTTCATTCTCAAGCTCAGGGTGTATTCTGAGACAAAAATATCTGCTTAACTTCTAGACCGCCGTAGCGAACAGTTCAGGACATTTAGTGCTTCTTCTTCAACCGATAGCTTTTCCTGCGGCTGGCACTATCATTCATGACCCGTTTGGTCCTCTTCACACAGTAGTACTTTGTGACAGTTTTGCGGCACTGCTCGCATTTTACAGCGCAACACCAGTGGAACTTGCAGTTGCAGCTAGACACCGTCTCGGCCCTGCGTTCCTCCACAGCCAGACCGCACTCTCCGCACAGCCGCTTGCAGCTACGCTTCTCCCATTTGCTCAGATTCTTGCCCTTCCTCAAGCACTCACGGCCCTCCGTGCCTGGCAAGCCCAGAGTGCGGTTCTCCAAGCAGTAGTCAGGGGAATCCTCCAAGTGCACCAGCTCTTTACGCGAGATGGAGCTGAAGGTCTCCGCGATCGCTCCGCGGCTGGCTGCGCTGTTCCCCGCGCCACGCAGCAGGTCCACCTTCACGGCCCTGTGATATTTCTCCTTTAGGTAGTTGCCCACTTCTCGAAACTCCGGCAACTGCAGCCAGCAGGTCTGAGTGGTGCAGCTGCCAGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85499 lncRNA downstream 2435 9490402 ~ 9490617 (-) True G74957
TU85496 lncRNA downstream 4945 9487870 ~ 9488107 (-) True G74954
TU85495 lncRNA downstream 5458 9487267 ~ 9487594 (-) True G74953
TU85358 lncRNA downstream 17058 9474304 ~ 9475994 (-) True G74824
TU85460 lncRNA downstream 152647 9340200 ~ 9340405 (-) True G74921
TU85511 lncRNA upstream 43168 9537086 ~ 9537398 (-) True G74968
TU85512 lncRNA upstream 43482 9537400 ~ 9537606 (-) True G74969
TU85514 lncRNA upstream 46518 9540436 ~ 9540649 (-) True G74971
TU85516 lncRNA upstream 50041 9543959 ~ 9544196 (-) True G74973
TU85519 lncRNA upstream 61381 9555299 ~ 9555531 (-) True G74976
CI01000012_09465977_09473475.mRNA mRNA downstream 19577 9465948 ~ 9473475 (-) True CI01000012_09465977_09473475
CI01000012_09419200_09460604.mRNA mRNA downstream 31764 9419095 ~ 9461288 (-) True CI01000012_09419200_09460604
CI01000012_09400481_09401810.mRNA mRNA downstream 90674 9400344 ~ 9402378 (-) False CI01000012_09400481_09401810
CI01000012_09379379_09394499.mRNA mRNA downstream 98002 9379151 ~ 9395050 (-) True CI01000012_09379379_09394499
CI01000012_09358336_09370502.mRNA mRNA downstream 122432 9358098 ~ 9370620 (-) True CI01000012_09358336_09370502
CI01000012_09513757_09517777.mRNA mRNA upstream 19350 9513268 ~ 9517777 (-) True CI01000012_09513757_09517777
CI01000012_09589749_09615649.mRNA mRNA upstream 94526 9588444 ~ 9615649 (-) True CI01000012_09589749_09615649
CI01000012_09754856_09756772.mRNA mRNA upstream 260677 9754595 ~ 9756956 (-) True CI01000012_09754856_09756772
CI01000012_09782840_09786910.mRNA mRNA upstream 288692 9782610 ~ 9786910 (-) True CI01000012_09782840_09786910
CI01000012_09789066_09792437.mRNA mRNA upstream 293777 9787695 ~ 9792437 (-) True CI01000012_09789066_09792437
TU85327 other downstream 91084 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85337 other downstream 409563 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85325 other downstream 419595 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85328 other downstream 422385 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85225 other downstream 1125409 8367081 ~ 8367643 (-) True G74701
TU85525 other upstream 81730 9575648 ~ 9575924 (-) False G74982
TU85530 other upstream 81730 9575648 ~ 9575972 (-) False G74982
TU86281 other upstream 1117997 10611915 ~ 10620871 (-) False G75608
TU86282 other upstream 1117997 10611915 ~ 10620871 (-) True G75608
TU87807 other upstream 2555126 12049044 ~ 12049222 (-) True G76984

Expression Profile