RNA id: TU85424


Basic Information

Item Value
RNA id TU85424
length 200
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G74885
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8993221 ~ 8993420 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAAGGTACAAAGATCACTTTCCTCAGTCTTTATGAGCGAGTCACTCAGTCGCAAAGACTTTTATACTGAAACTTGTTGTGAACACAGAACAAGACGCAAATGACAAATGCTTTGACTAGCGCTGTCAGAGTCAGCAGGGCACAAGAAAACCCATTAAATGTTAAAAGGACAAGATCGCAGCGGATATTCAAATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85421 lncRNA downstream 1975 8991038 ~ 8991246 (-) True G74882
TU85342 lncRNA downstream 128698 8862377 ~ 8864523 (-) True G74808
TU85350 lncRNA downstream 140216 8851072 ~ 8853005 (-) True G74816
TU85404 lncRNA downstream 153041 8839790 ~ 8840180 (-) True G74867
TU85376 lncRNA downstream 236027 8756985 ~ 8757194 (-) True G74842
TU85426 lncRNA upstream 1190 8994610 ~ 8994899 (-) True G74887
TU85326 lncRNA upstream 5406 9006633 ~ 9006790 (-) True G74792
TU85460 lncRNA upstream 346780 9340200 ~ 9340405 (-) True G74921
TU85358 lncRNA upstream 480884 9474304 ~ 9475994 (-) True G74824
TU85495 lncRNA upstream 493847 9487267 ~ 9487594 (-) True G74953
CI01000012_08947834_08963715.mRNA mRNA downstream 29409 8947696 ~ 8963812 (-) True CI01000012_08947834_08963715
CI01000012_08940340_08945093.mRNA mRNA downstream 47797 8939668 ~ 8945424 (-) True CI01000012_08940340_08945093
CI01000012_08908244_08917212.mRNA mRNA downstream 75625 8907936 ~ 8917596 (-) True CI01000012_08908244_08917212
CI01000012_08841980_08849453.mRNA mRNA downstream 143664 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
CI01000012_08805894_08831322.mRNA mRNA downstream 161899 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
CI01000012_09001061_09005079.mRNA mRNA upstream 7273 9000693 ~ 9005079 (-) False CI01000012_09001061_09005079
CI01000012_09068458_09070536.mRNA mRNA upstream 74950 9068370 ~ 9070765 (-) False CI01000012_09068458_09070536
CI01000012_09071892_09073410.mRNA mRNA upstream 78071 9071491 ~ 9073425 (-) False CI01000012_09071892_09073410
CI01000012_09082056_09083285.mRNA mRNA upstream 88457 9081877 ~ 9083483 (-) False CI01000012_09082056_09083285
CI01000012_09164233_09178383.mRNA mRNA upstream 170681 9164101 ~ 9179268 (-) True CI01000012_09164233_09178383
TU85225 other downstream 625578 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 625594 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 625594 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 727567 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1634676 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 74486 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 77951 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 89316 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 404656 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 582228 9575648 ~ 9575924 (-) False G74982

Expression Profile