RNA id: TU85376



Basic Information


Item Value
RNA id TU85376
length 210
lncRNA type intronic
GC content 0.42
exon number 1
gene id G74842
representative True

Chromosome Information


Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8756985 ~ 8757194 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGATAGAGCAAAACAAAACACCGGTCACGAATTAGAAGTCTAAAACAAGAATTTTTAAAGAGAAATGTTGGAGGAGCTTGAATTTTTTGCCCAGCCTTATTTGTTTGAACCACGAGAGGCATCTACTCTCAGTGTCGGTGCAAGTCGCTTTCAGCTCAAACTGGCATTTTAGTCTGGGACTAGGTTTAAGCCTTGTCTGTGAAACCGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85375 lncRNA downstream 6539 8750230 ~ 8750446 (-) True G74841
TU85371 lncRNA downstream 16298 8740462 ~ 8740687 (-) True G74837
TU85309 lncRNA downstream 85397 8671344 ~ 8671588 (-) True G74778
TU85259 lncRNA downstream 99574 8656726 ~ 8657411 (-) True G74728
TU85298 lncRNA downstream 144957 8611685 ~ 8612028 (-) True G74767
TU85404 lncRNA upstream 82596 8839790 ~ 8840180 (-) True G74867
TU85350 lncRNA upstream 93878 8851072 ~ 8853005 (-) True G74816
TU85342 lncRNA upstream 105183 8862377 ~ 8864523 (-) True G74808
TU85421 lncRNA upstream 233844 8991038 ~ 8991246 (-) True G74882
TU85424 lncRNA upstream 236027 8993221 ~ 8993420 (-) True G74885
CI01000012_08712109_08714569.mRNA mRNA downstream 40998 8711713 ~ 8715987 (-) True CI01000012_08712109_08714569
CI01000012_08686460_08701212.mRNA mRNA downstream 55773 8686460 ~ 8701212 (-) True CI01000012_08686460_08701212
CI01000012_08632596_08634518.mRNA mRNA downstream 122467 8632320 ~ 8634518 (-) True CI01000012_08632596_08634518
CI01000012_08604949_08626648.mRNA mRNA downstream 130337 8604835 ~ 8626648 (-) True CI01000012_08604949_08626648
CI01000012_08553489_08572819.mRNA mRNA downstream 184166 8553489 ~ 8572819 (-) True CI01000012_08553489_08572819
CI01000012_08805894_08831322.mRNA mRNA upstream 48700 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
CI01000012_08841980_08849453.mRNA mRNA upstream 84327 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
CI01000012_08908244_08917212.mRNA mRNA upstream 150742 8907936 ~ 8917596 (-) True CI01000012_08908244_08917212
CI01000012_08940340_08945093.mRNA mRNA upstream 182474 8939668 ~ 8945424 (-) True CI01000012_08940340_08945093
CI01000012_08947834_08963715.mRNA mRNA upstream 190502 8947696 ~ 8963812 (-) True CI01000012_08947834_08963715
TU85225 other downstream 389342 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 389358 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 389358 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 491331 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1398440 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 310712 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 314177 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 325542 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 640882 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 818454 9575648 ~ 9575924 (-) False G74982

Expression Profile