RNA id: CI01000012_08604949_08626648.mRNA


Basic Information

Item Value
RNA id CI01000012_08604949_08626648.mRNA
length 3364
RNA type mRNA
GC content 0.49
exon number 28
gene id CI01000012_08604949_08626648
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8604835 ~ 8626648 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATGCATCAGGCAATCACATCAGCTCAGATAGCCCACTGGTTTACAGTTGGGGCACAGTTTGCAAATATCAGAATCACTAATGAAGTGAAAAAGGAAGCAGAGCCCGAAGGTGCTGCAGTCAGGTCTGTAGAGCTGTTGTCTGATAAGACCTCTCCAGAGAAGTTGGTCTCTCTGATTGAGAATAACTCTGTCATCATCATTCGTGGAGCGACAGGCAGTGGAAAAACCACACAGCTGCCACAGTTCATCCTGGATCACTATACAGAGAGAAAGACACCCTGTAACCTAGTTGTCACTCAGCCACGCAAAATCGGCGCCACCAGCATTGCCCGCTGGGTGGCACGTGAACGCAAATGCACCCTGGGCAGCTTGGTGGGGTATCAGGTGGGTTTAGAGAAGATGGCCACAGAACACACCAAGCTGATTTATGTGACCACAGGAGTCTTACTGCAGAAATTAGTGGGAGCCAAAACACTCACAGAGTACTCGCACATCTTCATAGATGAGGTCCATGAGAGAACAGAGGAACTTGACTTCTTGTTGCTGGTTGTCAGAAAACTTCTACGATCCAATTCCAGATATGTCAAGGTCATTCTGATGTCCGCCACCATAAACTGTGCAGAGTTTGCAGAGTATTTCGGAACTCCGATCCGCAATCAGATGAATCCAGCATACGTGTTTGAGGTGGAAGGAGCCCCATACACCATTGAAGAGTTCTACCTGGATGATCTCAAAGCCATCCTGCCTCTTGGAATCAATGTGGACTTATCCCTCCCAGATGACCCTTGTATCACAGAGGAGATGTATAATGTTGCCGTCTCTCTCATCCAGAGCTTTGATGAAATGGAGGCTAAAGATCAAAGGTTGCAGGTATATCCTCTTCACTCTACTGTCACTTTAGAGGAGCAAAATGGAGTGTTCCTGGTTCCTGTACCTGGATACAGGAAGCTGGTTTGCGATAAGGAAACCAATTACAGCTGTCTCCGTATCACCTGGGCATCCAAGACCAGTTGCAATCAGCGTCGAGCCCTCACACCACCCAACCTCAATGACATCGAAAGGACCGTCCTGCAACTCAAACAGATCGGAGCTCTTTCTGTGCAGAGCAACAGTCAGAGGCAGTTTGATGGCGAGTTGACGTTTCTGGGACGGGTATTGGCGCACCTGCCCGTGGACCTGTGCTTGGGGAAGCTGATCGTTCTTGGACATGTGTTTGGCTGTCTAGAGGAGTGTCTTATCATTGGTATAATGCTTTGTGTATTAAGTTTCTTTGCCTTGCCATCACTGCAGCAGCTGGCTGGGTACAGGAGTAAGTTGAGCTTCGCACAAAATGTTCCAAGTGACTTCATTGCTTTCGTCAATGCCTTCAAGGCCTGGTACACATCTAGAGCTAAAGGAGAACTCAGACACCCAAAGGACGAACTGGAATGGGGCAAAGAGAACTGTATTCAGATCAAACGAATCAGAGAGGTGGCAGAACTCTTTGAGGATCTGAAGAAGAGAGTTTCCAGATTTAACATGCACATCAGCAGCTCCTCAAACCCCACAGACTACACCAGCCTGCACAAACAGAGATTCATCCTGCAGGTGGTCATTGCGGGTGCATTCTTCCCAAACTATTTCTCTCAGGGAGAGATTGATGAGCAGCTGGCATCTAAGGAACTTTCTGGAAATGATCCAAAGACAACCATTCTGACGAGGTGGAGGTCCAGGCTAAAGGAAAGCCCATCGCACACCTACGTTACGCAAGGTAGCCGCAAGTCCACACACACAGACCTTGACAGAGAGGCATTCAGTTTTCAAAAAGAAATGTCTTTCAGGGTTAACGTGGATGTTCAGAGCCATGCTGTGTGTCCTGTTGGAGTTCTGAGCAGCACTGTAAATCCAGAGAAACTTCCATCCAGCAGGGATTTTATCATTAACATCACAGAGACAGATGAGAGCAGTGTAGAGAAACAGTGTCAGTTAACAGCAGAGCTAAACATGAGAGACCTGAGACCCGTGTCTGTCTCTCTCTATCCAAACCTGCTGTGTGTGGCACCCTTCAAAGACGGACAGCAACTGGCCAAATACTACAGAGCCAAAATACTGCACATCCTGGACAGCAATGTAGAGGCCCAGGAGTTTTGCATCGCAGGCATGGGTCCATCTGCGCAGTCGCTGATTCTGGGTGATCGCTGGAGCAGTCGGGCACGTAACCGTTTTAAGACACTCACAAGCGGCCGCTCTGCCATCGTGTCCCTTTACTCCATTCTGCACGGCGTCATGCGTGTTGACCTGCACATCTCCTTGGAGATGGGCGATGTCAGTGTGGCTGACCTGCTAGTGCAGGAGGGACACGCTTGCCACACCCCTGAAAGCTTAGAGAGTCAGCAGTCCCATGAGGTTCTGACCTCTCTGTATCAGGATATGGCCAGTGGCAGATTCACCCCTAGTTCAGCTAGTGGTTCCTTGAACAGCAGGATGGAGGAAGACAAGCAGCTCGTCAACGAGCTCCTTCAGCACTTTTGTTCATCCAGCAGCAGTGCCCCCAAGTGCAAGGCTTTAGTTCATGGTCCCAGCAGCCCACATAAGGTTAGCGTTCACAGCATGAGCAGGATCAGCAACTTCAGGGCTGTTGGCATTGAGAGGGACAGTATTAACTCTGTAATGGTGAATGAAAAACCACAGGACTGGCATGAGAGGATGTTGGTGGCTGCAACCGTGTCTCTCAGTGCCTCAGGTTCTCGTATCTTGCTGAAGGAAACATCTCTGATGCCTCATATCCACGGCCTTCCCTCCCTTGTTACAATGCTCTTCACTCCTGTCATGGAACTGCGTACTAACGAGGAAAGAACCTGTTTTACTGGTGCTCTGTGCGGGCTGGGCTGGAACCCCATTTCCCAAGAAGCAGTGCTTCCCGAACATGACATTGAGCTTGCCTTTGATGTCAAGTTTGACATTGAAGACATCACTGAGATAAATGCGTTGAGAGGCACAATGAACAAGCTGGTGTGTGACGGACCAAATGGCTTACTGAACCTGAGCCCTGAGAAGATCAGCAGCCTTCAGGAGGAGGCCCGGGATCGACTTGTTAGACTGTTCATTAAAAACCCTCCCAGACCAGAGTGCACACCTGTGTACTACGACAAATTCAAGAAATGGAACCTGGTGGATCGCTCTCAGCAGATGGAGCTACAGGAGAAAGATGATGGGAAATCCAAAGGTGTACTGTTTCAGCTGCATCCCATCACCTTACTGAACATGTGAGGAGCATCATACAGAATTGTCTCCCAGAATCACAGAGGATGTTTTGTTGGGTTTTCAGTATTATCAGAACAAAGATGATGATGATGGAAATGCTTGAATGTTATGTCTATTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85281 lncRNA downstream 51946 8552439 ~ 8552889 (-) True G74750
TU85279 lncRNA downstream 54467 8550096 ~ 8550368 (-) True G74748
TU85266 lncRNA downstream 130508 8474051 ~ 8474327 (-) True G74735
TU85264 lncRNA downstream 186149 8418222 ~ 8418686 (-) True G74733
TU85227 lncRNA downstream 235426 8369098 ~ 8369409 (-) True G74703
TU85259 lncRNA upstream 30078 8656726 ~ 8657411 (-) True G74728
TU85309 lncRNA upstream 44696 8671344 ~ 8671588 (-) True G74778
TU85371 lncRNA upstream 113814 8740462 ~ 8740687 (-) True G74837
TU85375 lncRNA upstream 123582 8750230 ~ 8750446 (-) True G74841
TU85376 lncRNA upstream 130337 8756985 ~ 8757194 (-) True G74842
CI01000012_08553489_08572819.mRNA mRNA downstream 32016 8553489 ~ 8572819 (-) True CI01000012_08553489_08572819
CI01000012_08532750_08542754.mRNA mRNA downstream 59247 8532520 ~ 8545588 (-) True CI01000012_08532750_08542754
CI01000012_08520569_08525168.mRNA mRNA downstream 79592 8520120 ~ 8525243 (-) True CI01000012_08520569_08525168
CI01000012_08489570_08491016.mRNA mRNA downstream 112509 8489098 ~ 8492326 (-) True CI01000012_08489570_08491016
CI01000012_08445692_08459897.mRNA mRNA downstream 144938 8445658 ~ 8459897 (-) True CI01000012_08445692_08459897
CI01000012_08632596_08634518.mRNA mRNA upstream 5672 8632320 ~ 8634518 (-) True CI01000012_08632596_08634518
CI01000012_08686460_08701212.mRNA mRNA upstream 59812 8686460 ~ 8701212 (-) True CI01000012_08686460_08701212
CI01000012_08712109_08714569.mRNA mRNA upstream 85065 8711713 ~ 8715987 (-) True CI01000012_08712109_08714569
CI01000012_08745512_08773403.mRNA mRNA upstream 118579 8745227 ~ 8773403 (-) True CI01000012_08745512_08773403
CI01000012_08805894_08831322.mRNA mRNA upstream 179246 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
TU85225 other downstream 237192 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 237208 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 237208 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 339181 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1246290 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 441258 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 444723 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 456088 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 771428 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 949000 9575648 ~ 9575924 (-) False G74982

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00012016 True 4524 mRNA 0.48 35 NC_007124.7 31402067 ~ 31423346 (+)