RNA id: TU85371


Basic Information

Item Value
RNA id TU85371
length 226
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G74837
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8740462 ~ 8740687 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCGCTGCTGTTTGTGAGCCGTCACTTTACCTCAGCTAATTCCAGCCGCTGAACTTGGCATCTCTGCCGTGTTTGTGCTTTTTTTCTGGATTATTTTATACAATTATAAAATAATATGGCTTGCTGCATTAATGGTCGAGACTCGAGACAGATGTGCGTCTGTGTAGATGTGCACGCATGCGGAAGATAAACAGAACACACGTTGTTGGATCGTGGCATTGGCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85309 lncRNA downstream 68874 8671344 ~ 8671588 (-) True G74778
TU85259 lncRNA downstream 83051 8656726 ~ 8657411 (-) True G74728
TU85298 lncRNA downstream 128434 8611685 ~ 8612028 (-) True G74767
TU85281 lncRNA downstream 187573 8552439 ~ 8552889 (-) True G74750
TU85279 lncRNA downstream 190094 8550096 ~ 8550368 (-) True G74748
TU85375 lncRNA upstream 9543 8750230 ~ 8750446 (-) True G74841
TU85376 lncRNA upstream 16298 8756985 ~ 8757194 (-) True G74842
TU85404 lncRNA upstream 99103 8839790 ~ 8840180 (-) True G74867
TU85350 lncRNA upstream 110385 8851072 ~ 8853005 (-) True G74816
TU85342 lncRNA upstream 121690 8862377 ~ 8864523 (-) True G74808
CI01000012_08712109_08714569.mRNA mRNA downstream 24475 8711713 ~ 8715987 (-) True CI01000012_08712109_08714569
CI01000012_08686460_08701212.mRNA mRNA downstream 39250 8686460 ~ 8701212 (-) True CI01000012_08686460_08701212
CI01000012_08632596_08634518.mRNA mRNA downstream 105944 8632320 ~ 8634518 (-) True CI01000012_08632596_08634518
CI01000012_08604949_08626648.mRNA mRNA downstream 113814 8604835 ~ 8626648 (-) True CI01000012_08604949_08626648
CI01000012_08553489_08572819.mRNA mRNA downstream 167643 8553489 ~ 8572819 (-) True CI01000012_08553489_08572819
CI01000012_08745512_08773403.mRNA mRNA upstream 4540 8745227 ~ 8773403 (-) True CI01000012_08745512_08773403
CI01000012_08805894_08831322.mRNA mRNA upstream 65207 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
CI01000012_08841980_08849453.mRNA mRNA upstream 100834 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
CI01000012_08908244_08917212.mRNA mRNA upstream 167249 8907936 ~ 8917596 (-) True CI01000012_08908244_08917212
CI01000012_08940340_08945093.mRNA mRNA upstream 198981 8939668 ~ 8945424 (-) True CI01000012_08940340_08945093
TU85225 other downstream 372819 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 372835 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 372835 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 474808 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1381917 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 327219 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 330684 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 342049 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 657389 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 834961 9575648 ~ 9575924 (-) False G74982

Expression Profile