RNA id: TU85350


Basic Information

Item Value
RNA id TU85350
length 644
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G74816
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8851072 ~ 8853005 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGTGAGTGAATGATGACACAATTTTCATTTTTGGGTGAACTATCCCTTTAACAGGCGTGACGGCCAGTTTATAATAATCAGTTCTCCTCCACTCCTCTCATTGTTTTTCTGTACCTGGATGAACAGAAGCAGTAGTGGGCTTAGCTCCTGGTCTTTTTGTTCTGGTGACTGTTGGCCCAGCTGAGTTAGCTGATCTCTCAGAAACATCACTAGATCCTCATCTGCTTTCAGGTCCCCATTTGTCTCATTGTTAATTTGGGTTGTTTTCAGTTCTATGCTCTCTGCACTCTCCCCCGACGCACTAAGTTCGCCGTTCTCCTTACTGACTGTGTCCATTTCTCCACCAGGCTCCTGTTGTTTGGTAGGTGGCATCTCAAGTCTTTGATAAGGCTTGTGTACGTAGATTTATGGCTGGACAGAAGGCTTTCCTCTGGGGTCCCATGTCACAACACTCAGTGAGTGGCCAGCTGAGACATACCTCCTAATCTAGTTGCCTGAACTTTGCACAATGTGAAACTCTGACATCAGCTGCGCCTGGTCATGTGCCTCACTTCCTAGTGAAAAAAGCAGAAGAACGCCTTTTTTGCGCATCTGTGTGTGTTTTCCACATTTAATAGGCTCAAGTAGGATCATGTGAAGAAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85404 lncRNA downstream 10892 8839790 ~ 8840180 (-) True G74867
TU85376 lncRNA downstream 93878 8756985 ~ 8757194 (-) True G74842
TU85375 lncRNA downstream 100626 8750230 ~ 8750446 (-) True G74841
TU85371 lncRNA downstream 110385 8740462 ~ 8740687 (-) True G74837
TU85309 lncRNA downstream 179484 8671344 ~ 8671588 (-) True G74778
TU85342 lncRNA upstream 9372 8862377 ~ 8864523 (-) True G74808
TU85421 lncRNA upstream 138033 8991038 ~ 8991246 (-) True G74882
TU85424 lncRNA upstream 140216 8993221 ~ 8993420 (-) True G74885
TU85426 lncRNA upstream 141605 8994610 ~ 8994899 (-) True G74887
TU85326 lncRNA upstream 145821 9006633 ~ 9006790 (-) True G74792
CI01000012_08841980_08849453.mRNA mRNA downstream 1515 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
CI01000012_08805894_08831322.mRNA mRNA downstream 19750 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
CI01000012_08745512_08773403.mRNA mRNA downstream 77669 8745227 ~ 8773403 (-) True CI01000012_08745512_08773403
CI01000012_08712109_08714569.mRNA mRNA downstream 135085 8711713 ~ 8715987 (-) True CI01000012_08712109_08714569
CI01000012_08686460_08701212.mRNA mRNA downstream 149860 8686460 ~ 8701212 (-) True CI01000012_08686460_08701212
CI01000012_08908244_08917212.mRNA mRNA upstream 54931 8907936 ~ 8917596 (-) True CI01000012_08908244_08917212
CI01000012_08940340_08945093.mRNA mRNA upstream 86663 8939668 ~ 8945424 (-) True CI01000012_08940340_08945093
CI01000012_08947834_08963715.mRNA mRNA upstream 94691 8947696 ~ 8963812 (-) True CI01000012_08947834_08963715
CI01000012_09001061_09005079.mRNA mRNA upstream 147688 9000693 ~ 9005079 (-) False CI01000012_09001061_09005079
CI01000012_09068458_09070536.mRNA mRNA upstream 215365 9068370 ~ 9070765 (-) False CI01000012_09068458_09070536
TU85225 other downstream 483429 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 483445 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 483445 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 585418 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1492527 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 214901 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 218366 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 229731 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 545071 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 722643 9575648 ~ 9575924 (-) False G74982

Expression Profile