RNA id: TU85259


Basic Information

Item Value
RNA id TU85259
length 415
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G74728
representative True

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8656726 ~ 8657411 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAGTTTGACTCCCAGTAGCGCTGTACTTTTCTAAAAGTGAGGTTGGAGCAGTCCGACAGTCCACTAAGAAAAGTCCCAGAGGTTTTCTCTGTGAGGGCTTGATCTTCCATGGCATCTCCTGCCACATCACCGCTTCTCTGCAAAGATCCTGACTGAAGCTCATTGTGGAGTTTCAAGGCATCTACTGTCAGATCACTTTTTTCCTGAGGGACGGCTGAAATATCGGCTCCTCGCGGCTTTTCGATAGCGACATGTCTCCGGATTGCTATCACTACTGTGCCCTTTCTTCCACCGCCTTATTTTCTGGGCTGCTCCAGACTTAAGTTTTCCAGACTTCACCATTTTTGCAGGTGGAAATCCTTATAGTGCTAAGAGCACGTTGTTTTCTCCTCCAGTCTGCGTGTCGCGCTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85298 lncRNA downstream 44698 8611685 ~ 8612028 (-) True G74767
TU85281 lncRNA downstream 103837 8552439 ~ 8552889 (-) True G74750
TU85279 lncRNA downstream 106358 8550096 ~ 8550368 (-) True G74748
TU85266 lncRNA downstream 182399 8474051 ~ 8474327 (-) True G74735
TU85264 lncRNA downstream 238040 8418222 ~ 8418686 (-) True G74733
TU85309 lncRNA upstream 13933 8671344 ~ 8671588 (-) True G74778
TU85371 lncRNA upstream 83051 8740462 ~ 8740687 (-) True G74837
TU85375 lncRNA upstream 92819 8750230 ~ 8750446 (-) True G74841
TU85376 lncRNA upstream 99574 8756985 ~ 8757194 (-) True G74842
TU85404 lncRNA upstream 182379 8839790 ~ 8840180 (-) True G74867
CI01000012_08632596_08634518.mRNA mRNA downstream 22208 8632320 ~ 8634518 (-) True CI01000012_08632596_08634518
CI01000012_08604949_08626648.mRNA mRNA downstream 30078 8604835 ~ 8626648 (-) True CI01000012_08604949_08626648
CI01000012_08553489_08572819.mRNA mRNA downstream 83907 8553489 ~ 8572819 (-) True CI01000012_08553489_08572819
CI01000012_08532750_08542754.mRNA mRNA downstream 111138 8532520 ~ 8545588 (-) True CI01000012_08532750_08542754
CI01000012_08520569_08525168.mRNA mRNA downstream 131483 8520120 ~ 8525243 (-) True CI01000012_08520569_08525168
CI01000012_08686460_08701212.mRNA mRNA upstream 29049 8686460 ~ 8701212 (-) True CI01000012_08686460_08701212
CI01000012_08712109_08714569.mRNA mRNA upstream 54302 8711713 ~ 8715987 (-) True CI01000012_08712109_08714569
CI01000012_08745512_08773403.mRNA mRNA upstream 87816 8745227 ~ 8773403 (-) True CI01000012_08745512_08773403
CI01000012_08805894_08831322.mRNA mRNA upstream 148483 8805894 ~ 8831322 (-) True CI01000012_08805894_08831322
CI01000012_08841980_08849453.mRNA mRNA upstream 184110 8841521 ~ 8849557 (-) True CI01000012_08841980_08849453
TU85225 other downstream 289083 8367081 ~ 8367643 (-) True G74701
TU85219 other downstream 289099 8367019 ~ 8367627 (-) False G74701
TU85218 other downstream 289099 8367081 ~ 8367627 (-) False G74701
TU85146 other downstream 391072 8264329 ~ 8265654 (-) True G74648
TU84502 other downstream 1298181 7355252 ~ 7355377 (-) True G74087
TU85328 other upstream 410495 9067906 ~ 9070667 (-) True CI01000012_09068458_09070536
TU85325 other upstream 413960 9071371 ~ 9073457 (-) True CI01000012_09071892_09073410
TU85337 other upstream 425325 9082736 ~ 9083489 (-) True CI01000012_09082056_09083285
TU85327 other upstream 740665 9398076 ~ 9401968 (-) True CI01000012_09400481_09401810
TU85525 other upstream 918237 9575648 ~ 9575924 (-) False G74982

Expression Profile