RNA id: CI01000013_02484671_02489919.mRNA


Basic Information

Item Value
RNA id CI01000013_02484671_02489919.mRNA
length 1113
RNA type mRNA
GC content 0.47
exon number 6
gene id CI01000013_02484671_02489919
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2484671 ~ 2490260 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCATTTATTTCAGATGTATGGCCCATTGTACCGTGCTTCTCAGAAACGGATGGTTTTTCTTTCGTCCCTCTGAGGTATTATATTTCTGCTATGTTTGGAAGATTATGCTTTTTTGATTCCTCAGCACTTTGTTTTAAATTTGCTCTTTAATTACATTGTATAAGTTTCCTAGCATTATCTCGACATGAGTATTCAAAGCGCAGTGTGGCTGAGGATATGATTTCAGTCAGACCGTTGACTCGTGGGCTTCGCTGATGTTTAGTTAAACTGCTGCAGAACTGAGCAGGCTTTATTTTTCCTACCTGTGTTTTACTGCTGAGGGGGACACAGATCACAGCCTATGGCACATCCTGTAAGGAAACATGGGGAAGGAGTTTCAGAAGGGCAGGTGGGGGTGGAAGCTGTGCTTGGGAAACGGTTCCAGAGAGGTTGTTTCAAAAGGGAACATAGTCAGAAAAGCCCTTCACTGCTGACAGGAAAGCTGCCTTTTCCTCAGTGCGTTTGTCTGGCAGGTCGCTCCAGCAGTCACCAGCGCCCAGTGGGGGACTTTGAGTATCCAACAACACACTGCAGTGTTCCTGTGTTTCTCAGCTTTTTGGAGCAGCATGGTGGAACTTCGCTCTTATTTGGTGACTCGGGTGGTTTTGGCGGGAAGCAAACATTGGACCCTACAGACATTGGCTGGGCTGATACTGAGATAGGACAGGAAGAGACAGAAAAAGTTGTAATGGTGTACCTGAAGGCTCCTATGATCCTGAATGGAGTGTGTGTGATCTGGAGAGGCTGGATTGATCTTCAGCGTCTGGATGGGATGGGTTGTCTGGAATATGATGATGAGAGGGCACAGCATGAGGATGCTCTAGCCCAAGCAGCCTTTGAGGAAGCCCGCAGAAGGACTCGTGATTTTGAGGACAGGGATCGCTCGCACCGTGAGGACTTGGAGGAACAGGTAAATAAGTGGCACCTCACATCATTTCTGTCTGTTCCCTGTTCCCTGCATGTTTTGAGAGCTCTTGACATAGCTAAACAGCTTGTCTGGAGTAACACTGATTTGATCACTTGTCATTTAGCAGATGCCGATGGCACAGCTCAGTCATTTAATAACTCAGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90802 lncRNA downstream 18788 2465669 ~ 2465883 (-) True G79744
TU90798 lncRNA downstream 22427 2461984 ~ 2462244 (-) True G79740
TU90794 lncRNA downstream 28009 2456349 ~ 2456662 (-) True G79736
TU90783 lncRNA downstream 40904 2443422 ~ 2443767 (-) True G79725
TU90098 lncRNA downstream 330159 2154273 ~ 2154512 (-) True CI01000013_02144531_02157776
TU90729 lncRNA upstream 96192 2586452 ~ 2602617 (-) True G79672
TU90810 lncRNA upstream 140790 2631050 ~ 2631306 (-) True G79752
TU90813 lncRNA upstream 142228 2632488 ~ 2632836 (-) True G79755
TU90814 lncRNA upstream 142897 2633157 ~ 2633376 (-) True G79756
TU90815 lncRNA upstream 143144 2633404 ~ 2633727 (-) True G79757
CI01000013_02483356_02484395.mRNA mRNA downstream 276 2482770 ~ 2484395 (-) True CI01000013_02483356_02484395
CI01000013_02321895_02371964.mRNA mRNA downstream 112707 2321895 ~ 2371964 (-) True CI01000013_02321895_02371964
CI01000013_02295361_02314298.mRNA mRNA downstream 169859 2294788 ~ 2314812 (-) True CI01000013_02295361_02314298
CI01000013_02144531_02157776.mRNA mRNA downstream 326664 2143984 ~ 2158007 (-) False CI01000013_02144531_02157776
CI01000013_02009256_02029638.mRNA mRNA downstream 454874 2009251 ~ 2029797 (-) False CI01000013_02009256_02029638
CI01000013_02515682_02518699.mRNA mRNA upstream 25200 2515460 ~ 2519236 (-) True CI01000013_02515682_02518699
CI01000013_02529628_02531898.mRNA mRNA upstream 39297 2529557 ~ 2531898 (-) True CI01000013_02529628_02531898
CI01000013_02536846_02547039.mRNA mRNA upstream 46586 2536846 ~ 2547039 (-) True CI01000013_02536846_02547039
CI01000013_02606100_02629603.mRNA mRNA upstream 115840 2606100 ~ 2629603 (-) True CI01000013_02606100_02629603
CI01000013_02718442_02730091.mRNA mRNA upstream 228046 2718306 ~ 2731589 (-) True CI01000013_02718442_02730091
TU89207 other downstream 2457774 26528 ~ 26897 (-) True G78296
TU90747 other upstream 322987 2813247 ~ 2815392 (-) True G79690
TU91381 other upstream 1074911 3565171 ~ 3567537 (-) True G80262
TU91391 other upstream 1229173 3719433 ~ 3723607 (-) True G80271
TU91525 other upstream 1413807 3904067 ~ 3906240 (-) True G80399
TU91578 other upstream 1574682 4064942 ~ 4066017 (-) True G80443

Expression Profile