RNA id: CI01000013_02685665_02686639.mRNA


Basic Information

Item Value
RNA id CI01000013_02685665_02686639.mRNA
length 4369
RNA type mRNA
GC content 0.37
exon number 1
gene id CI01000013_02685665_02686639
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2682467 ~ 2686835 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAATCATTAGCAAATGTGCTGTTATATTATGGAAGTACCCCCTTATTTTAATCTAATATTTCAAGTCAATATTTCAGATCAAAGGCTTTGGGCTCGTTGTCTGGTTATGGTTAAACTGGATATGTTGCAAGAAATACAGGAAATGCCACATTGAAACTAAGAATTAAGAACAAGTAGTGATATATTGCCATGGCCTTATATTATAATGGACTTAATAAGTAACTGTTTCATTCTGCTTCTTATTAGATTTCAGTTAATAAGAAGATTTTGAATATTTTTTAATAAAAGATGTGGTAAATGTTTGCAGCTTGCAAAAGGGTGAAAGAAACGTGAAAACAACAAACCAGAAAGAACATCAAGAGGAAGAACGCTAGGAGGCAGCATCAACACACCCGAAAAAGGAGAATTGGACAGTGCAAATGACCGAGGAGATCACCCTGTAAAAGGTGACCTTACAAAAGTATTTTGCTGGTTTGAGTTGATTTATTTAGCTTGTTAGCTTATTTTATGTGTTGCTATTTTATTATTTTATTTTATATCCACCATAAATTATTTCCTGTGAATGTGCAAGACTTTAAATTCATTAGCTTCTATAAGTAAACAACTAGAAGAGTGCAGTTTTTTTGCAGTAAACCAGTGGTTACGATAATACGTTAAAATAATATGGTAACACTTTTCAATAAGGTCTCATTTCTTAACATTAGTTAACTCTCTACAGCACAGCAACAGAAAGTTTTCTTAACATTTACATTTTTCTTTAAATGATTACAACCAATTAGAAAGGTTGAGTAAGGTGTGGGAGTCACTATCAAGCACCATTTAAAGGTGGGACATCCTGTTCTGACACATGGTCACAGGGGCACATGGTGTGAGAATGCAAGATTATTTGCTTTAGTATTTCCTTTTGTCAGGTTTTATGAAGTTTTTTATTTTATTTTGCATGTTCAGAAATTCAGTTTTTCTTTTCGTTGCCTCAGGGCAACATTGTGCGATAAGGGGTACTTTTCGAGGATGTTTTGGACAGTACCTCACCTTGGCAATAATGTGTTATAAGAAGGGAAGATGCAGGGTTCCTGGGTGCAAAGTAACACCCAAAGTGATGTGCAAAAATTGTAACATACACCACTATTTCACAAAAGAGAAGAACTGCTCTTTGAAGTTTCGTACTGAGTGAAATCTTATTAAATGAAGTACATTATATGACATGACACACTACATGATACAAACCTATGCAGGTGTCAAATTCAATATATCAATGTCTTTCAAGTGTTTTTCCCTTTTTACTTAATGATTTCTTGACTTTTTTTTTCTTTTTTAAATTGTGATTTTGCATTGCTCTCTGAGCATTGTCTTATGATAATTTTCTCTGTGATTCTGTACTATTGTTGCACAATAGTACAGGGGTGTAAAAAACATTTTTATCACTAAAATGTTTATGTGCCATCAACATGTGTGCAGTAGAGGGTTGTATTAACTAACATTAACTAATAATGAGCAATACATTTGTTACAGTTTTTATTAATCTTTGCTAACATTAGTTAACAAAGTTCATTGTTTGTACAGTAACGGTTCATTGTTTGTTCATGTTAGTTCACAGTGAATTACAGTGTTAGATTACCCAAAAATGAAATTTCTGTCATTAATTACTCACCCTCATGCCGTCCCACATCCGGAAGACCTTAAATCATCTTCGGAACACAAATTAAGATATTTTTGATGAAATCTGAGAGGTGTCTGAGTTCTCCATAAACAGCAATTTAACCACCACTTTAAAGGTCCAGAAAGATACTAAAGACATCGTTAAAAAAGTCGACGTTACTACAGTGGTTCAACCTTAAAGGGATAGTTCACCCAAAAATGAAAATTATCCCATGATTTACTCACCATCAAGCCAACCTAGGTGTATATGACTATCTTCTTTCAGACCAACATAATCAGAGATATATTTAAAAATATCCTTAGTCTGCAAGTTTATAATGGTTGTGAATGGCTGCCCAATTTCTGAAGACAAAAAAAAAATGCATCCATCCATAAAAAATGAATCCATACGTCTCCAGGGGGTTAATAAAAGCCTTCTGATGTGAATCGATGCGTTTCTGTAAGACAAGTATCCTTATTTAAAACTTCATAAAGTAAAATAAGGAGCTTCCGGTGCGTCAGCCATATGCATTCGACATACGTCCAAAACACGTTAACATCCGCGACGTAGTACACAATGACATGACGTACTACGCGTTGTATCCCTTTAATCTTATGAAGCGACGAGAATACTTTTTGTGTGCAAAAACAAAACAAAAATAATGACTTTATTCAACAATATCTTCTCTTCTATGTCATTCTCCTACGCTGTTTACGTTCAGTGCTTCCAGGTTCTACATCAGAACGCCGGCTCAGTATTGGCAGACGCTGTTCACGTGAGCAGCACGAAGCGTGAGAGTCGGCCAATAATGAAGTGTCGAACATAAACAGTGTAGGAGAAAGACACAGAAGAGAAGATATTGTTGAAAAAAATTTTCATTCATTTTTTCTGATAAGGATTTTTACAAAGTCTTTGTTAAAGCATAATCCATGAACCAAACCACTCGTTGTGCTTCATGGGAGTGGGTGTTCCCTGTAGAGCTCTTTAGGCACTTTGGAGAAAATTAATGGAAGTTTTACCTCTGGAACCCATCTGAGAGGCTCTACTAAGCTGAATAAACTGCTATTGGAAAACAGCTTATCATTTAATGAACTGACTGCCTATCACCTAATCTTCAACATGTTTTCTTAAACATTTGTTTTGGAGCGTTTTGGAGCTGGTTGGAACTGAACTATGCAGGACGTTGCAAAAATGCAGCAAACAATAATAAAATAAAATAATAAATTAATTAATAAATAAATCTGTTATGGTTTGATCTTCTGGAACTTTCCGTAAATTAGGAACTATGGAAACTAATAAACTCAGAGCAAAGCAGAACAGGGAAAACAACCAAAACACAATGAAACTAAACAGACACAGAATTACAAGTTACAATAGTAAATTTTTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTGCAAGCACTTTGTTTTTGCGAAGACTGAGATGAGAGCAAAGCTGTGGTTACAGAATTGGGAGGAGTCAACTTAGTTCCTCTTCTTCAAGCAGTCATAGCTCAGGTGCAGCATTTTCCAGACAAGAAATTTTAATGATGGAGCCAAAATTAGACTTTAATTCAACATCTAACAGTACTTCTCTGGGTTCAAAGCAGATCGCTCCTGCTGTAGTTCTGGGTTTGTGCTGTTTGGTGGGTTTGCCAAGCAATATCGCAGTAATTATCAGCATTTCTCGTGAATGGAACAAACATTTGAGCTTTACCTTAAAACTAATGGTAAACCTTGCTGTCTCTGATGCTTTGACACTTTGCTTGGCTCCTGTGGTGCTGTGTGGAATACTGTTTGGATGGAAACTCGGCCTTTGGTCTTGTAGGATCTTGTTCTTCTTGGGTCACTGGAGTCTGTATGTTGCTGTCCTGACGGTCAGCTCCATGAGTGTGCACCGCTATCACAATGTCATCAAGTCCAGAGTCACTAACAGGATGATACTGCACAGACTGGAGAGACGGCACAGGCGCCTTCAGCTGATTGCCATCTGGATTCTAGCCTTTGTTTTTGCCCTACCGATATTTTTCACTCAAGGACTCAAAGACAAGGATGGATTGCAGAGATGTCAGAGGGCAATGGAGTCACAGTCTGTAGTAGTGACTGTTGTGCTTCTTGAGATCCTGTTGGGGTTCGTCATCCCATTATTGATCATGTTAACATGTTATCTCTGGTTGCACAAAGGTTTGAGAGAAAAAGCCAAGAGCTCCAATCTAACTAGAGCTCCACAGGACCAGGATCCCAGAAAACAGGGGCCAAAGGTTAGGACTTACAAGAAGAGACTTGTGGTCAGCATCGTTGTGGCTTTCTTTCTGTTTTGGACTCCTTTGCACATCATCAATGTGATAGATATAGTTACTACTCTGACTGAAACGTCTTGTCCAGATGTTCATTCCCAACTGAAGTCCTTCCGTAGAGTTTATGGTGATTCAAGCAAGACTCTGGCTTTGGTAAACTGCTGTCTGAATCCTTTTCTCTATGCTGTCTCTTCAGGAAATATTCTAAAATGTTTCAGAAAGAAATAATTCCTTTCTGATTGGATAATTTACTTCCAGTCAAATATATATTTTAAAGACTCCCTAGTTCCTCATTGCTGTTCTTGTGTGGTTTGCAGTAGATTAACACATGCTGTTGATGGCGCAGCAATATTCAACATTCATTTGACTGCATTTCATGCATGCACGCATTCATTCATACATACTGTCACATGTATCCACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90379 lncRNA upstream 84096 2595938 ~ 2598371 (+) True G79358
TU90363 lncRNA upstream 108944 2572701 ~ 2573523 (+) True G79344
TU90351 lncRNA upstream 155537 2526106 ~ 2526930 (+) True G79332
TU90208 lncRNA upstream 168612 2513478 ~ 2513855 (+) True G79193
TU90329 lncRNA upstream 213354 2468883 ~ 2469113 (+) True G79310
TU90445 lncRNA downstream 7877 2694712 ~ 2695125 (+) True G79402
TU90440 lncRNA downstream 47269 2734104 ~ 2748629 (+) True G79397
TU90484 lncRNA downstream 80618 2767453 ~ 2767739 (+) True G79440
TU90485 lncRNA downstream 81642 2768477 ~ 2769076 (+) True G79441
TU90486 lncRNA downstream 82642 2769477 ~ 2769829 (+) True G79442
CI01000013_02666598_02669821.mRNA mRNA upstream 12646 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02656037_02664145.mRNA mRNA upstream 18069 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02528016_02529126.mRNA mRNA upstream 153221 2527448 ~ 2529246 (+) True CI01000013_02528016_02529126
CI01000013_02510121_02510417.mRNA mRNA upstream 171933 2510083 ~ 2510534 (+) False CI01000013_02510121_02510417
CI01000013_02411870_02429950.mRNA mRNA upstream 252510 2410427 ~ 2429957 (+) True CI01000013_02411870_02429950
CI01000013_02692887_02696848.mRNA mRNA downstream 5608 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
CI01000013_02709871_02711692.mRNA mRNA downstream 22618 2709453 ~ 2712499 (+) True CI01000013_02709871_02711692
CI01000013_02815238_02816664.mRNA mRNA downstream 128345 2815180 ~ 2817323 (+) False CI01000013_02815238_02816664
CI01000013_02859975_02863496.mRNA mRNA downstream 173140 2859975 ~ 2863946 (+) True CI01000013_02859975_02863496
CI01000013_03019688_03044233.mRNA mRNA downstream 332853 3019688 ~ 3044374 (+) True CI01000013_03019688_03044233
TU90328 other upstream 215296 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1729498 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1972918 708833 ~ 709549 (+) True G77533
TU91155 other downstream 897173 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1378098 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2148243 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3369463 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3391727 6079666 ~ 6082367 (+) True G81666

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026511 True 966 mRNA 0.43 1 NC_007129.7 22716708 ~ 22717673 (-)