RNA id: TU91826



Basic Information


Item Value
RNA id TU91826
length 341
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G80652
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4158390 ~ 4158730 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTCAGTTTGGAGCCTGGGCATGTGCAGAAGGAATCGTCAGTGGAGTTGACATTTATTTGAATGTTTATTAATGTACATTCATTGTTCATTTTCAAATAAATTACTAGTGAAAACTACAATACATAGGTCAAAACAACATATCGTAATTGATGTATTTTAAATATATAAATTATATACAATTTAAAATTCTACCTGTAAAATAATATTCTGTTTCTAGAGCAATAATATTTTTGAAACAGCAAATTCAGTAGATAAACTCAATAATATGCCAATAGAAACAACTCTAAAATGTCAGAAACGGTCCTGCCATTTTAAATCAAGTTGAACTAACATTACAGGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91825 lncRNA downstream 147 4158041 ~ 4158243 (-) True G80651
TU91807 lncRNA downstream 22907 4135233 ~ 4135483 (-) True G80639
TU91628 lncRNA downstream 43878 4114278 ~ 4114512 (-) True G80491
TU91614 lncRNA downstream 59427 4098744 ~ 4098963 (-) True G80477
TU91587 lncRNA downstream 133893 4024134 ~ 4024497 (-) True G80452
TU91843 lncRNA upstream 23062 4181792 ~ 4182249 (-) True G80669
TU91846 lncRNA upstream 27936 4186666 ~ 4187276 (-) True G80671
TU91849 lncRNA upstream 55220 4213950 ~ 4214279 (-) True G80674
TU91852 lncRNA upstream 80936 4239666 ~ 4239976 (-) True G80677
TU91920 lncRNA upstream 219321 4378051 ~ 4378268 (-) True G80743
CI01000013_04117349_04119235.mRNA mRNA downstream 38237 4116262 ~ 4120153 (-) True CI01000013_04117349_04119235
CI01000013_04091772_04094858.mRNA mRNA downstream 63532 4090505 ~ 4094858 (-) True CI01000013_04091772_04094858
CI01000013_04069517_04083528.mRNA mRNA downstream 74644 4069045 ~ 4083746 (-) True CI01000013_04069517_04083528
CI01000013_03938659_03945995.mRNA mRNA downstream 212091 3938503 ~ 3946299 (-) True CI01000013_03938659_03945995
CI01000013_03929711_03933888.mRNA mRNA downstream 224272 3928833 ~ 3934118 (-) True CI01000013_03929711_03933888
CI01000013_04186280_04202524.mRNA mRNA upstream 26806 4185536 ~ 4202524 (-) True CI01000013_04186280_04202524
CI01000013_04206025_04212137.mRNA mRNA upstream 46991 4205721 ~ 4212137 (-) True CI01000013_04206025_04212137
CI01000013_04215370_04216413.mRNA mRNA upstream 56231 4214961 ~ 4216592 (-) True CI01000013_04215370_04216413
CI01000013_04219612_04232778.mRNA mRNA upstream 60856 4219586 ~ 4233151 (-) True CI01000013_04219612_04232778
CI01000013_04241966_04247231.mRNA mRNA upstream 83181 4241911 ~ 4247544 (-) True CI01000013_04241966_04247231
TU91578 other downstream 92373 4064942 ~ 4066017 (-) True G80443
TU91525 other downstream 252150 3904067 ~ 3906240 (-) True G80399
TU91391 other downstream 434783 3719433 ~ 3723607 (-) True G80271
TU91381 other downstream 590853 3565171 ~ 3567537 (-) True G80262
TU90747 other downstream 1342998 2813247 ~ 2815392 (-) True G79690
TU92144 other upstream 398138 4556868 ~ 4558903 (-) False G80954
TU92232 other upstream 590079 4748809 ~ 4750561 (-) True G81032
TU92796 other upstream 1580796 5739526 ~ 5744038 (-) True G81547
TU94120 other upstream 1723319 5884149 ~ 5884372 (-) True G82727
TU94655 other upstream 3180979 7380297 ~ 7382360 (-) True G83206

Expression Profile