RNA id: TU91843


Basic Information

Item Value
RNA id TU91843
length 458
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G80669
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4181792 ~ 4182249 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCCGACAAGCCAGGCCACTCTCACTCAGTGAAAAATACATCGCGGAGCAAAGAGGACACTGACAACGCGTCGACAGACAAGACAGGGCAGGTTACTTTTGATATGAAACAAAGTCTCAAATTTTGTCATTTTTAAAGAAATTTAAACAATAAATACCGTTTTGTGGCTCTTTAATGTGTCGTGACAGATCGCTGTACCGCCTCAGTTCAAGCGGCTTGTGAGCCGATCATCTATTCCTACTAATTCATTTATAGCATCAACTAAACATGAATGAACATCAGAAGTAATGTTGTTTCAACCGTGGAAAGACGTCAGTACACACCATTTTTCAAGTTCGAGTCCACCGACTTAAATCTACTAACTCCCCTGACTGCCTTGTAGGACAAAATGGCGGATTCGACGTTATGATTAGTTAGATCGCCTGCCAGTCAAACTCCCGGCGAAGGGTCGACAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91826 lncRNA downstream 23062 4158390 ~ 4158730 (-) True G80652
TU91825 lncRNA downstream 23549 4158041 ~ 4158243 (-) True G80651
TU91807 lncRNA downstream 46309 4135233 ~ 4135483 (-) True G80639
TU91628 lncRNA downstream 67280 4114278 ~ 4114512 (-) True G80491
TU91614 lncRNA downstream 82829 4098744 ~ 4098963 (-) True G80477
TU91846 lncRNA upstream 4417 4186666 ~ 4187276 (-) True G80671
TU91849 lncRNA upstream 31701 4213950 ~ 4214279 (-) True G80674
TU91852 lncRNA upstream 57417 4239666 ~ 4239976 (-) True G80677
TU91920 lncRNA upstream 195802 4378051 ~ 4378268 (-) True G80743
TU91925 lncRNA upstream 216045 4398294 ~ 4398519 (-) True G80748
CI01000013_04117349_04119235.mRNA mRNA downstream 61639 4116262 ~ 4120153 (-) True CI01000013_04117349_04119235
CI01000013_04091772_04094858.mRNA mRNA downstream 86934 4090505 ~ 4094858 (-) True CI01000013_04091772_04094858
CI01000013_04069517_04083528.mRNA mRNA downstream 98046 4069045 ~ 4083746 (-) True CI01000013_04069517_04083528
CI01000013_03938659_03945995.mRNA mRNA downstream 235493 3938503 ~ 3946299 (-) True CI01000013_03938659_03945995
CI01000013_03929711_03933888.mRNA mRNA downstream 247674 3928833 ~ 3934118 (-) True CI01000013_03929711_03933888
CI01000013_04186280_04202524.mRNA mRNA upstream 3287 4185536 ~ 4202524 (-) True CI01000013_04186280_04202524
CI01000013_04206025_04212137.mRNA mRNA upstream 23472 4205721 ~ 4212137 (-) True CI01000013_04206025_04212137
CI01000013_04215370_04216413.mRNA mRNA upstream 32712 4214961 ~ 4216592 (-) True CI01000013_04215370_04216413
CI01000013_04219612_04232778.mRNA mRNA upstream 37337 4219586 ~ 4233151 (-) True CI01000013_04219612_04232778
CI01000013_04241966_04247231.mRNA mRNA upstream 59662 4241911 ~ 4247544 (-) True CI01000013_04241966_04247231
TU91578 other downstream 115775 4064942 ~ 4066017 (-) True G80443
TU91525 other downstream 275552 3904067 ~ 3906240 (-) True G80399
TU91391 other downstream 458185 3719433 ~ 3723607 (-) True G80271
TU91381 other downstream 614255 3565171 ~ 3567537 (-) True G80262
TU90747 other downstream 1366400 2813247 ~ 2815392 (-) True G79690
TU92144 other upstream 374619 4556868 ~ 4558903 (-) False G80954
TU92232 other upstream 566560 4748809 ~ 4750561 (-) True G81032
TU92796 other upstream 1557277 5739526 ~ 5744038 (-) True G81547
TU94120 other upstream 1699800 5884149 ~ 5884372 (-) True G82727
TU94655 other upstream 3157460 7380297 ~ 7382360 (-) True G83206

Expression Profile