RNA id: TU101132


Basic Information

Item Value
RNA id TU101132
length 481
lncRNA type intronic
GC content 0.39
exon number 2
gene id G88826
representative True

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 3466907 ~ 3467408 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGTCTCTTTATCTGTGACTATACACAAGGGCCGTGTGACTGATACACACACATCCTCTTTCTGACTGTTGCCAGCATTTCCTTCTCTTCCTGGTCAGACGGTGCAGCTTCCACCACAGTAATCTGACAGGAATAAGATTTGTTCTGGTTTAAATGCTGTCAGCACCTTCAAAGAGGCACTCGAAACTGGTTGAAATTCTTAAGTTGGAAATTCTAATGTTTTCTGCGCCACTTTCATTAACACAATCAGCTCCTTTCTTTATTCTTCTAAAAGACACCAGTCCGCAAAAATAAGTGTGCTTGAGACCGTTTGTTCAACAAACATTAATGATGCAACAATTTTTATTTTTTTATTGAGAAGCACGCTAGCAACCACATTAATACATAAACCACGCAAAAAAAAACAAAAACACTTAGAGCAACTTAGTAACTGCATGCAACACTTAGCAACCAGTACCAAGCTACTTAGACACAAGCTACTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101182 lncRNA upstream 2874 3463777 ~ 3464033 (+) True CI01000015_03464878_03470145
TU101181 lncRNA upstream 3206 3463447 ~ 3463701 (+) False CI01000015_03464878_03470145
TU101173 lncRNA upstream 16967 3449624 ~ 3449940 (+) True G88866
TU101126 lncRNA upstream 100448 3295239 ~ 3366459 (+) True G88820
TU101166 lncRNA upstream 125307 3339847 ~ 3341600 (+) True G88860
TU101128 lncRNA downstream 116314 3583722 ~ 3585104 (+) True G88822
TU101133 lncRNA downstream 177584 3649989 ~ 3650929 (+) True G88827
TU101110 lncRNA downstream 183593 3651001 ~ 3652716 (+) True G88804
TU101129 lncRNA downstream 312594 3780002 ~ 3781041 (+) True G88823
TU101219 lncRNA downstream 343503 3810911 ~ 3811145 (+) True G88910
CI01000015_03460997_03462972.mRNA mRNA upstream 3909 3460997 ~ 3462998 (+) True CI01000015_03460997_03462972
CI01000015_03452576_03457978.mRNA mRNA upstream 8876 3451656 ~ 3458031 (+) True CI01000015_03452576_03457978
CI01000015_03373445_03409681.mRNA mRNA upstream 55942 3373445 ~ 3410965 (+) True CI01000015_03373445_03409681
CI01000015_03146304_03147242.mRNA mRNA upstream 319168 3143611 ~ 3147739 (+) True CI01000015_03146304_03147242
CI01000015_03042640_03045708.mRNA mRNA upstream 421033 3041613 ~ 3045874 (+) True CI01000015_03042640_03045708
CI01000015_03482829_03494230.mRNA mRNA downstream 15421 3482829 ~ 3494230 (+) True CI01000015_03482829_03494230
CI01000015_03498502_03512450.mRNA mRNA downstream 31094 3498502 ~ 3512882 (+) True CI01000015_03498502_03512450
CI01000015_03558039_03580054.mRNA mRNA downstream 90631 3558039 ~ 3580124 (+) True CI01000015_03558039_03580054
CI01000015_03592958_03598421.mRNA mRNA downstream 124743 3592151 ~ 3600514 (+) False CI01000015_03592958_03598421
CI01000015_03608694_03649223.mRNA mRNA downstream 140968 3608376 ~ 3649223 (+) False CI01000015_03608694_03649223
TU100954 other upstream 436617 3026680 ~ 3030290 (+) False G88670
TU100955 other upstream 436617 3026680 ~ 3030290 (+) True G88670
TU100556 other upstream 950478 2512970 ~ 2513011 (+) True G88328
TU100381 other upstream 966313 2384016 ~ 2500594 (+) False G88172
TU100157 other upstream 1590313 1876004 ~ 1876594 (+) True G87972
TU102216 other downstream 824438 4291846 ~ 4314351 (+) True G89822
TU103067 other downstream 1746888 5214296 ~ 5216731 (+) False G90622
TU103058 other downstream 1748996 5216404 ~ 5263807 (+) False G90622
TU103147 other downstream 1940958 5408366 ~ 5408440 (+) True G90687
TU103259 other downstream 2436686 5904094 ~ 5906150 (+) False G90777

Expression Profile