Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU101110 |
| length | 1716 |
| lncRNA type | inter_gene |
| GC content | 0.34 |
| exon number | 1 |
| gene id | G88804 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000015 |
| NCBI id | null |
| chromosome length | 8631711 |
| location | 3651001 ~ 3652716 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU101133 | lncRNA | upstream | 72 | 3649989 ~ 3650929 (+) | True | G88827 |
| TU101128 | lncRNA | upstream | 58340 | 3583722 ~ 3585104 (+) | True | G88822 |
| TU101132 | lncRNA | upstream | 183593 | 3466907 ~ 3467408 (+) | True | G88826 |
| TU101182 | lncRNA | upstream | 186968 | 3463777 ~ 3464033 (+) | True | CI01000015_03464878_03470145 |
| TU101181 | lncRNA | upstream | 187300 | 3463447 ~ 3463701 (+) | False | CI01000015_03464878_03470145 |
| TU101129 | lncRNA | downstream | 127286 | 3780002 ~ 3781041 (+) | True | G88823 |
| TU101219 | lncRNA | downstream | 158195 | 3810911 ~ 3811145 (+) | True | G88910 |
| TU101249 | lncRNA | downstream | 194299 | 3847015 ~ 3847224 (+) | True | G88939 |
| TU101236 | lncRNA | downstream | 301492 | 3954208 ~ 3959652 (+) | True | G88926 |
| TU102018 | lncRNA | downstream | 383049 | 4035765 ~ 4035998 (+) | True | G89631 |
| CI01000015_03608694_03649223.mRNA | mRNA | upstream | 1778 | 3608376 ~ 3649223 (+) | False | CI01000015_03608694_03649223 |
| CI01000015_03592958_03598421.mRNA | mRNA | upstream | 50487 | 3592151 ~ 3600514 (+) | False | CI01000015_03592958_03598421 |
| CI01000015_03558039_03580054.mRNA | mRNA | upstream | 70877 | 3558039 ~ 3580124 (+) | True | CI01000015_03558039_03580054 |
| CI01000015_03498502_03512450.mRNA | mRNA | upstream | 138119 | 3498502 ~ 3512882 (+) | True | CI01000015_03498502_03512450 |
| CI01000015_03482829_03494230.mRNA | mRNA | upstream | 156771 | 3482829 ~ 3494230 (+) | True | CI01000015_03482829_03494230 |
| CI01000015_03660564_03665735.mRNA | mRNA | downstream | 7848 | 3660564 ~ 3666760 (+) | True | CI01000015_03660564_03665735 |
| CI01000015_03689293_03707456.mRNA | mRNA | downstream | 36577 | 3689293 ~ 3707616 (+) | True | CI01000015_03689293_03707456 |
| CI01000015_03733443_03765495.mRNA | mRNA | downstream | 80727 | 3733443 ~ 3765508 (+) | True | CI01000015_03733443_03765495 |
| CI01000015_03826245_03844971.mRNA | mRNA | downstream | 173529 | 3826245 ~ 3845390 (+) | True | CI01000015_03826245_03844971 |
| CI01000015_03852286_03855347.mRNA | mRNA | downstream | 199522 | 3852238 ~ 3855541 (+) | True | CI01000015_03852286_03855347 |
| TU100954 | other | upstream | 620711 | 3026680 ~ 3030290 (+) | False | G88670 |
| TU100955 | other | upstream | 620711 | 3026680 ~ 3030290 (+) | True | G88670 |
| TU100556 | other | upstream | 1134572 | 2512970 ~ 2513011 (+) | True | G88328 |
| TU100381 | other | upstream | 1150407 | 2384016 ~ 2500594 (+) | False | G88172 |
| TU100157 | other | upstream | 1774407 | 1876004 ~ 1876594 (+) | True | G87972 |
| TU102216 | other | downstream | 639130 | 4291846 ~ 4314351 (+) | True | G89822 |
| TU103067 | other | downstream | 1561580 | 5214296 ~ 5216731 (+) | False | G90622 |
| TU103058 | other | downstream | 1563688 | 5216404 ~ 5263807 (+) | False | G90622 |
| TU103147 | other | downstream | 1755650 | 5408366 ~ 5408440 (+) | True | G90687 |
| TU103259 | other | downstream | 2251378 | 5904094 ~ 5906150 (+) | False | G90777 |
