RNA id: CI01000016_11167265_11226409.mRNA


Basic Information

Item Value
RNA id CI01000016_11167265_11226409.mRNA
length 1560
RNA type mRNA
GC content 0.52
exon number 7
gene id CI01000016_11167265_11226409
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 11167265 ~ 11226409 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAGCTCTGATGGATTTGTTGGTGGATCTATGCAGTCAGTACCATCTGAATCCAGCATATCACACTTTGGAGCTGCTGTCACCTGATGCTCAGCCCGTCAGTTTCAAGCCCAATGCCCTGCTGGGCGCTCTGGATGTCTCCTGCGCCCTGATCAAAGAACGAGTGCTGGAGGACAAGGTGATCCGAAAACCTCCACCCAAAGTGCCAGAGAAAACGGTGCGTTTGGTAGTGAACTATCATCACAGTCAGAAGGCCGTGGTTCGAGTAAATCCATTGGTCCCCCTGCATACCCTGGTGCCTGTGATCTGTCAGAAGTGCGAGTTTGACCCTACCCATGTCCTGCTGTTCAGAGACAATATCAGCCACCAACAACTGGAACTGGACAAGTCCCTGAGCGAGTTGGGTATCAGGGAACTCTATGTCCTGGATCAGATGCTAGTTCTCCAGCCTAAAATGGCTTCGACACCTGCCCTGAGCTACTCAGCTGAATCTCTTCACTCCAACAGTCTGAGTGGATCAGATAAAAAGGGTCTGCTGGGCTTCCTCAAGTTTAATCGCAGGAAATCAAAGGGTATATCAGTGGTGGCAAGTGGCTCCTGTGTGGAGACCCGTCCCAGCACTCTTGGTCAGTCTCAGTCTGTGATGAACATCTCCAAGATGTCCCCGAAAGTGGAATTAAAGAAACGCAGAGCTCCAGCACCCCCATCAGCTCCCACACAGACTTTACCACTAACATCACAGATAAGCCTCGGCTCTCCGTCCACACACAACCAGCTAAAGAAGCGGAAGGCTCCAGCACCTCCACCCACACCGCCCCCCAGTACACCCGAGCCAGTTATTTCCACCTCTGTGCCTACTGCACATGTGCTGGGCCCCTGCATCCCGGTGCCAGTTGAAAGGACCCTGCTGCCAGCTCCCAGAGCCTCAACTCCAGCTAATGACTCTGATCTAAGCCATAGTATTGAGGATTCAGAGCTGGCCAGGTCCATCTGCAGTAGCTCCAGCGGTGATGATGCAGCTGCAGGATCCAGCAGCAGCAGTCTTGCTGAAGAACCTATCACACACCAGGCTCATGTGATAGCTGCATACACCCTATCTACACCAGAACCTCAATTAGAACCTGAAAACAAGGAAGAAGCAGCTCCTCTCACTATGCCAGAACAAGAACCAGGTCCAAGTTCAGAGGATCCAACACCCGAAGACCCAGAGGTAGAGATGGAGCTAAAAATGGAAGAGATGGAGAATAACCGTAATAGTGGAATAGCCTGGCTGCATTCAGCTCATGAGTCTTTGTCAGAGAGGATGGCAGAGCAGGAAGTGGAAACAGTGTCCATGGCCAGCAGTGAGAGTTTTGCAGACCAGGGCTATGCGGCATCAGAGGGCATGGCCGAAGAGTCTGGCCCAGTCTCTCCCTCTGAAAGGATACAATCTGTGTCACCTGTGGACATCATGTCTCTGAACAGTGGCTCTGCTATGTCTGCAAAGCAGTCCAAAGATTCTTCCAGTGACAGTGATGAGGGCTGTGCGACCTGGGGTTCCAGAAAAAGGTATGCACATGTA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K18623 COBL; protein cordon-bleu

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114340 lncRNA downstream 80760 11068849 ~ 11086505 (-) True G100489
TU114380 lncRNA downstream 151849 11014694 ~ 11015416 (-) True G100529
TU114367 lncRNA downstream 185684 10981218 ~ 10981581 (-) True G100516
TU114365 lncRNA downstream 190805 10976154 ~ 10976460 (-) True G100514
TU114363 lncRNA downstream 192390 10974646 ~ 10974875 (-) True G100512
TU114352 lncRNA upstream 35138 11261547 ~ 11289191 (-) True G100501
TU114342 lncRNA upstream 51147 11277556 ~ 11300621 (-) True G100491
TU114418 lncRNA upstream 94477 11320886 ~ 11322827 (-) False G100562
TU114417 lncRNA upstream 95375 11321784 ~ 11322827 (-) True G100562
TU114474 lncRNA upstream 390989 11617398 ~ 11617618 (-) True G100616
CI01000016_11161373_11165449.mRNA mRNA downstream 1816 11159368 ~ 11165449 (-) True CI01000016_11161373_11165449
CI01000016_11034620_11091604.mRNA mRNA downstream 75661 11034620 ~ 11091604 (-) True CI01000016_11034620_11091604
CI01000016_10989691_11026452.mRNA mRNA downstream 140813 10988377 ~ 11026452 (-) True CI01000016_10989691_11026452
CI01000016_10970952_10971167.mRNA mRNA downstream 196098 10970507 ~ 10971167 (-) True CI01000016_10970952_10971167
CI01000016_10931329_10940939.mRNA mRNA downstream 226212 10930812 ~ 10941053 (-) True CI01000016_10931329_10940939
CI01000016_11353238_11464979.mRNA mRNA upstream 126324 11352733 ~ 11464979 (-) True CI01000016_11353238_11464979
CI01000016_11670870_11794943.mRNA mRNA upstream 444409 11670818 ~ 11795083 (-) True CI01000016_11670870_11794943
CI01000016_11866962_11874982.mRNA mRNA upstream 639575 11865984 ~ 11874982 (-) True CI01000016_11866962_11874982
CI01000016_11876020_11896223.mRNA mRNA upstream 649083 11875492 ~ 11896223 (-) True CI01000016_11876020_11896223
CI01000016_11908468_11923802.mRNA mRNA upstream 681318 11907727 ~ 11925765 (-) True CI01000016_11908468_11923802
TU114011 other downstream 1114876 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 1352310 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 1654837 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 1654903 9511357 ~ 9511415 (-) False G98896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00020527 False 7196 mRNA 0.45 15 NC_007127.7 8529772 ~ 8663552 (-)