RNA id: TU114064


Basic Information

Item Value
RNA id TU114064
length 295
lncRNA type intronic
GC content 0.38
exon number 1
gene id G100240
representative True

Chromosome Information

Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 10095586 ~ 10095880 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATAAACGTGGCTTGTGGCTCCCGCCTGGCCCAAAACCAACATTGGCTCAACAGGACAGCTTGACTAATGACAGATGGGCGGAGTGTTTGGGAAAATATCTAAATATAAAAATTTTACAATGTCATATACTTTCTGGAATAGCTTTTTAAAACAGTCATGTTCATTGTTGAAAAACCATGGATATATTTCTGTCTTCTTCCTTAGTGCAGTACATACACTGATCAGACATTTTCAGTACTGTGCAATGAAACACCACTCCCTATGAATAACATCCTGGACAGTAAAAAAAGCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU114063 lncRNA downstream 3426 10091744 ~ 10092160 (-) True G100239
TU114060 lncRNA downstream 11953 10083319 ~ 10083633 (-) True G100236
TU114059 lncRNA downstream 12551 10082800 ~ 10083035 (-) True G100235
TU114045 lncRNA downstream 62310 10033014 ~ 10033276 (-) True G100224
TU114038 lncRNA downstream 73808 10021503 ~ 10021778 (-) True G100217
TU114071 lncRNA upstream 19452 10115332 ~ 10115591 (-) True G100247
TU114074 lncRNA upstream 20442 10116322 ~ 10116571 (-) True G100249
TU114081 lncRNA upstream 37115 10132995 ~ 10133255 (-) True G100255
TU114082 lncRNA upstream 39968 10135848 ~ 10136074 (-) True G100256
TU114105 lncRNA upstream 101838 10197718 ~ 10198034 (-) True G100278
CI01000016_10025722_10027148.mRNA mRNA downstream 68327 10025502 ~ 10027259 (-) True CI01000016_10025722_10027148
CI01000016_09959197_09962175.mRNA mRNA downstream 132401 9957922 ~ 9963185 (-) False CI01000016_09959197_09962175
CI01000016_09739013_09746676.mRNA mRNA downstream 348910 9739013 ~ 9746676 (-) True CI01000016_09739013_09746676
CI01000016_09654611_09661197.mRNA mRNA downstream 434389 9653502 ~ 9661197 (-) True CI01000016_09654611_09661197
CI01000016_09638800_09651752.mRNA mRNA downstream 443834 9638592 ~ 9651752 (-) True CI01000016_09638800_09651752
CI01000016_10228314_10299064.mRNA mRNA upstream 132434 10228314 ~ 10299064 (-) True CI01000016_10228314_10299064
CI01000016_10386099_10386648.mRNA mRNA upstream 289945 10385825 ~ 10387482 (-) True CI01000016_10386099_10386648
CI01000016_10443526_10488009.mRNA mRNA upstream 346965 10442845 ~ 10488186 (-) True CI01000016_10443526_10488009
CI01000016_10571262_10572444.mRNA mRNA upstream 474825 10570705 ~ 10573868 (-) True CI01000016_10571262_10572444
CI01000016_10600154_10633808.mRNA mRNA upstream 503322 10599202 ~ 10633808 (-) True CI01000016_10600154_10633808
TU114011 other downstream 43197 10051168 ~ 10052389 (-) True G100190
TU112845 other downstream 280631 9814361 ~ 9814955 (-) True G99178
TU112535 other downstream 583158 9511357 ~ 9511415 (-) True G98896
TU112534 other downstream 583224 9511357 ~ 9511415 (-) False G98896

Expression Profile