RNA id: TU116519


Basic Information

Item Value
RNA id TU116519
length 546
lncRNA type intronic
GC content 0.36
exon number 2
gene id G102402
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 163795 ~ 164708 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTCAATTCAATTCACATTTATTTGTATAGCGCTTTTCACAATACATATCGTTTCAAAGCAGCTTTACAGAGAATGCATGTCAACATTACAATTTGGAGAATGCAGTTAGCTAATAATGTAATAATTTAGGCAATTAATATACAATCACTGTTAGCAATTTAATTGAAGGTAGAAGCAAAGAGCTCCTGGAAAAATGAATTACATATTAACAATAATTAGGATATATAGAAATTTGCGAATGTGCGTGTTGATCCAGATGTTGCATCTTCTGAAGTCCTCGCAGGAGTTGGCGCCGTCTCTTCCAAAGTTTTAGTCATCTGAGGTCTTCTTAAGAGGCTGGATCCAAACTGAAACTGATGTACTCTCTAGTCACCTCGGGACAGGCGTCCCGAGGTCCAAAGAAGTCCAAATTTTTCTTATTTCGCTTGAATATCATTTTTTTCCATTTAGTACTGCCCTTCGGAAGCAACAGAAAATACTTGCATGTTTCCCGGAAGACAAATTAAATACAATTTACCTTGATCTTCAAATTCCAAATGTTATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU116450 lncRNA downstream 112652 50766 ~ 51143 (-) True G102344
TU116520 lncRNA upstream 515 165223 ~ 165665 (-) True G102403
TU116469 lncRNA upstream 2997 167705 ~ 252568 (-) True G102358
TU116563 lncRNA upstream 74848 239556 ~ 337952 (-) True G102445
TU116468 lncRNA upstream 86640 251348 ~ 252568 (-) True G102358
TU116598 lncRNA upstream 130506 295214 ~ 299423 (-) True G102477
CI01000018_00071464_00083422.mRNA mRNA downstream 80373 71408 ~ 83422 (-) True CI01000018_00071464_00083422
CI01000018_00064269_00068791.mRNA mRNA downstream 92719 63585 ~ 71076 (-) True CI01000018_00064269_00068791
CI01000018_00029420_00038887.mRNA mRNA downstream 124908 28870 ~ 38887 (-) True CI01000018_00029420_00038887
CI01000018_00207988_00210462.mRNA mRNA upstream 43262 207970 ~ 212329 (-) True CI01000018_00207988_00210462
CI01000018_00229092_00242308.mRNA mRNA upstream 64114 228822 ~ 242391 (-) False CI01000018_00229092_00242308
CI01000018_00259118_00271046.mRNA mRNA upstream 93179 257887 ~ 271454 (-) True CI01000018_00259118_00271046
CI01000018_00318175_00326190.mRNA mRNA upstream 152981 317689 ~ 326812 (-) True CI01000018_00318175_00326190
CI01000018_00333019_00452055.mRNA mRNA upstream 168311 333019 ~ 452055 (-) True CI01000018_00333019_00452055
TU118112 other upstream 1794789 1959497 ~ 1960058 (-) True G103842
TU118149 other upstream 2221500 2386208 ~ 2400903 (-) True G103873
TU119324 other upstream 3317396 3482104 ~ 3500514 (-) True G104968
TU119461 other upstream 3842989 4007697 ~ 4017817 (-) False G105104
TU119464 other upstream 3842989 4007697 ~ 4010575 (-) True G105104

Expression Profile