RNA id: TU121068


Basic Information

Item Value
RNA id TU121068
length 524
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G106495
representative True

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 6491240 ~ 6491763 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCTGTCTTTGGAGGGACAGAAATTGCTCAGATTTTATTAAAAAGATCTGCCTTTGTGTTTTGAAGATAAGGGGTTTGGAACGACATGAGGGTGAGTAATTAATGACAGGATTTGCATTTATGGGTGAACCATCCCTTTAAAGCATGGCCCAAAAACCATTTTTTATTTTATTTACAGCAAAACATTTTTTGTTGCCTTTCATTACATTTCATTAATTAGTAAAAAGTAAACATGAAGCCATAATGAAATTAATATAGAATATTTGTTGGTGTCTTTGTACCATTTTCTTTATTTCTGTTTACAATCAGATACTGAGGCATGGTGCTTCAATGCATGTCAGCTACATATTTGATCTACTGATGTGCAAGTCTGGATTACATGTTTTAAAATGCATATGGTACAGATAATGTAAAAAGAAATACATATTTTTTAATTTTGACATGGATATTTTGTGAACAAAGTACATGCTTATATGTAATAAGTAACAATAAATGTCAATTTTTAAAAAAATGAAAACAAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121045 lncRNA downstream 16815 6471528 ~ 6474425 (-) True G106484
TU121071 lncRNA downstream 107751 6380753 ~ 6383489 (-) True G106498
TU121030 lncRNA downstream 222536 6268467 ~ 6268704 (-) True G106479
TU121028 lncRNA downstream 238194 6252799 ~ 6253046 (-) True G106477
TU120599 lncRNA downstream 315591 6175432 ~ 6175649 (-) True G106096
TU121115 lncRNA upstream 44580 6536343 ~ 6536648 (-) True G106539
TU121117 lncRNA upstream 46120 6537883 ~ 6538167 (-) True G106541
TU121119 lncRNA upstream 48673 6540436 ~ 6540674 (-) True G106543
TU121046 lncRNA upstream 54086 6545849 ~ 6547225 (-) True CI01000018_06547019_06585316
TU121168 lncRNA upstream 216021 6707784 ~ 6707988 (-) True G106579
CI01000018_06484577_06490112.mRNA mRNA downstream 1128 6484577 ~ 6490112 (-) True CI01000018_06484577_06490112
CI01000018_06475800_06482278.mRNA mRNA downstream 8949 6475309 ~ 6482291 (-) True CI01000018_06475800_06482278
CI01000018_06425724_06426234.mRNA mRNA downstream 65006 6425346 ~ 6426234 (-) True CI01000018_06425724_06426234
CI01000018_06370452_06384112.mRNA mRNA downstream 106474 6370118 ~ 6384766 (-) True CI01000018_06370452_06384112
CI01000018_06353801_06362659.mRNA mRNA downstream 127199 6353722 ~ 6364041 (-) True CI01000018_06353801_06362659
CI01000018_06493607_06502730.mRNA mRNA upstream 1582 6493345 ~ 6502730 (-) True CI01000018_06493607_06502730
CI01000018_06503908_06515370.mRNA mRNA upstream 12019 6503782 ~ 6515370 (-) True CI01000018_06503908_06515370
CI01000018_06547019_06585316.mRNA mRNA upstream 54623 6546386 ~ 6585316 (-) False CI01000018_06547019_06585316
CI01000018_06598234_06605351.mRNA mRNA upstream 106218 6597981 ~ 6605934 (-) True CI01000018_06598234_06605351
CI01000018_06639339_06649926.mRNA mRNA upstream 147444 6639207 ~ 6649971 (-) False CI01000018_06639339_06649926
TU120472 other downstream 465364 5891336 ~ 6023917 (-) True G105976
TU120471 other downstream 465364 5957606 ~ 6023917 (-) True G105976
TU119553 other downstream 1615401 4855081 ~ 4875839 (-) True CI01000018_04856240_04875704
TU119577 other downstream 2245230 4243467 ~ 4246010 (-) True G105200
TU119464 other downstream 2480665 4007697 ~ 4010575 (-) True G105104
TU121114 other upstream 38684 6530447 ~ 6533512 (-) True G106538
TU121056 other upstream 148849 6641872 ~ 6641956 (-) True G106487

Expression Profile