RNA id: CI01000021_04529150_04530169.mRNA



Basic Information


Item Value
RNA id CI01000021_04529150_04530169.mRNA
length 1936
RNA type mRNA
GC content 0.38
exon number 1
gene id CI01000021_04529150_04530169
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4528424 ~ 4530359 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGCGTGAATTTGTTTGAACAGTCTGTTTTTCGGCAGGATGCCGATGTATTGTATCACTCTGAGATCTCATGTCGCGCAAAGAGACAGATGAAAGACATCGACCACCTTAGACTCGTGGAGAGATCTGCGAAAGCAAGAGCGCAGCTTTATAAAGTAAAGCACTTATCCCCGGAGGCTCAACTGTCACAGTATGGAGAACATCACAAGTCCCTTCATCCCAAACCCAACATGCAACAACAGCATGGACTTATACTATCACAACTCTCCCAACCGGAGCGATCTGAATTGCACGCCGCCGGCTGACTACTTATTTTACGCAGATCTGTACGTGGTTCTCCCGGTCATTTACTCCGTGATATGTGCCGTAGGTCTGACGGGCAACACGGCGGTCATATATGTGATCCTCAAAGCACCCAAAATGAAGACGGTGACCAATATGTTCATTCTGAACTTGGCGATCGCCGACGACCTCTTCACTTTAGTGCTGCCCATCAATATAGCGGAGCATCTGTTACACTACTGGCCGTTCGGCGAAGTGCTTTGCAAAATTATTTTAAGCATCGATCACTATAACATCTTCTCCAGCATCTACTTTCTGACAGTTATGAGTGTGGACCGGTACCTGGTGGTGCTGTCGACCGTGCGCTCCAAGCGCATGCCGTACCGCACATACCGGGCAGCGAAGATAGTGAGTCTGTGCGTGTGGCTGCTGGTGATCCTCATCGTCATGCCCTTTACCGTGTTCGCAGGAGTCTACATCAGCCCCGACGACTCCGACAGGAAAAGCTGCGTGCTGAGTTTCCCTAGTCCTGAAAGTTTATGGTTCAAAGCGAGCCGGATTTACACCCTCATACTGGGCTTTGCCATTCCAGTGTCTACAATTTGCATTCTTTACACCATGATGCTGTACAAACTAAGAAACATGCGTCTGAACACCAACGCCAAAGCGCTGGACAAAGCCAAGAAGAAGGTGACTATCATGGTGTTTATTGTACTGGCCGTGTGCCTGTTCTGCTGGACGCCCTTTCACCTCAGCACCATCGTAGCGCTGACCACAGACCTTCGGACCACACCGCTTCTCATCGGCATCTCGTACTTCATTACCAGCCTGAGCTACGCCAACTCCTGTCTGAACCCGTTCCTCTACGCCTTCCTGGACGACAGCTTCAGAAAAGCATTCAAGAAGATGTTAGAATGTAGACCTGCATGAATGTAACGCATTTTGAAGGGACGAGTAACAGGGTTGTGGACCATTCAGAATTTAATTCGATTCCTGGATTTGAATTAAGGTAGCAAACAGATGCAGTTTATGTATTTAGCAATTGGAATATACCTCATTAAAATATAAAATAGCCTATATTACCAAATTTCAAATAAATATTTTATATTTTAATTATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATCCTGTAGTTTGTGGCCAATTAAATTCAAAACTGGATTTTTAAATTCAAAATTGTGTCCAGCCCTGATTAAAATAGTTATGATCAAAACTGAATACTGACAGTGTCTCAAAACAAAACTGATCAGCCCATATAGGCATTTTATTTTTTAAACCATTATCGTTCCAATTCAGTATTGTAGTTTCTATCCAATTAAATTCAAAGTCACACTCATAAACTTAAAGGGAACCAATTTTAAAATTCTATTTTTTTTGCCCAAATACAGTTCCAGTGAATAAA

Function


GO: NA

KEGG:

id description
K08377 NPBWR2; neuropeptides B/W receptor 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU134405 lncRNA downstream 3913 4524264 ~ 4524511 (-) True G118304
TU134400 lncRNA downstream 17026 4511194 ~ 4511398 (-) True G118299
TU134398 lncRNA downstream 21808 4506294 ~ 4506616 (-) True G118297
TU133913 lncRNA downstream 235948 4291193 ~ 4292476 (-) True G117844
TU133844 lncRNA downstream 256630 4265949 ~ 4271794 (-) True G117775
TU134456 lncRNA upstream 37977 4568336 ~ 4568551 (-) True G118347
TU134476 lncRNA upstream 60172 4590531 ~ 4590766 (-) True G118367
TU134485 lncRNA upstream 68709 4599068 ~ 4599304 (-) True G118376
TU134498 lncRNA upstream 79071 4609430 ~ 4609658 (-) True G118389
TU134526 lncRNA upstream 139603 4669962 ~ 4670256 (-) True G118417
CI01000021_04248892_04258642.mRNA mRNA downstream 269640 4248064 ~ 4258784 (-) True CI01000021_04248892_04258642
CI01000021_04191779_04194388.mRNA mRNA downstream 334025 4191606 ~ 4194399 (-) True CI01000021_04191779_04194388
CI01000021_04183864_04186516.mRNA mRNA downstream 341868 4183179 ~ 4186556 (-) True CI01000021_04183864_04186516
CI01000021_04102462_04141661.mRNA mRNA downstream 386399 4100664 ~ 4142025 (-) True CI01000021_04102462_04141661
CI01000021_04061478_04074988.mRNA mRNA downstream 453436 4061478 ~ 4074988 (-) True CI01000021_04061478_04074988
CI01000021_04554591_04555147.mRNA mRNA upstream 24128 4554487 ~ 4555870 (-) True CI01000021_04554591_04555147
CI01000021_04567226_04567519.mRNA mRNA upstream 36788 4567147 ~ 4567616 (-) True CI01000021_04567226_04567519
CI01000021_04803637_04803849.mRNA mRNA upstream 272804 4803163 ~ 4803849 (-) True CI01000021_04803637_04803849
CI01000021_04807791_04818427.mRNA mRNA upstream 276526 4806885 ~ 4820526 (-) True CI01000021_04807791_04818427
CI01000021_04822864_04825902.mRNA mRNA upstream 291807 4822166 ~ 4825902 (-) True CI01000021_04822864_04825902
TU133831 other downstream 478832 4045284 ~ 4045446 (-) True G117762
TU133802 other downstream 596706 3837422 ~ 3931056 (-) True G117733
TU133799 other downstream 596706 3927790 ~ 3931056 (-) False G117733
TU133801 other downstream 596706 3927790 ~ 3931056 (-) True G117733
TU133963 other downstream 1483637 3044019 ~ 3044787 (-) True G117893
TU134763 other upstream 219738 4750097 ~ 4767372 (-) True G118639
TU134934 other upstream 623532 5153891 ~ 5154291 (-) True G118801
TU135394 other upstream 994496 5524855 ~ 5530926 (-) True G119215
TU135448 other upstream 1083083 5613442 ~ 5613989 (-) True G119267
TU135414 other upstream 1250715 5781074 ~ 5782246 (-) True G119233

Expression Profile