RNA id: CI01000026_04412437_04412814.mRNA


Basic Information

Item Value
RNA id CI01000026_04412437_04412814.mRNA
length 477
RNA type mRNA
GC content 0.45
exon number 3
gene id CI01000026_04412437_04412814
representative False

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 4412204 ~ 4412878 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTATAAACAAAAACTAACGTTCTGGGAACCAAAATTGTTTGCTGGGATGCCTATCTTTCCTTTTATATTTGTCTAATGCCCGTATGGCTACCGAATGAGATCCCAAGTCCTACACTCTTCATATGACGCTCACACGTGATTGTGACGCACGAAGGAGCGATTCCATTTATTTCTGCCAGACAAGATTTATCCGCGAAAGCATCATACGTTAGCTGAAATTAAGCTAGGAAAATGGACCAGTGTGACTGTTCTAAAACTGGATCTTGTAACTGCGGGCAAAACTGCAAATGCACCAACTGCGCGTGCGCACAAGGCAAGAAAAATCCGGTAGGTTGCGGCAGTTGTCCATCTGAATGCAGTAAAAAGGGCACGAAAGGCTGCGAGAGCGCGTGCAAGGACAAGGAGAAATCGTGCGACACAAGCTGCTGCAAATGAAAGGCTATGAAATGAGCTGTGACACTGTGCTCCTTTAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU145634 lncRNA upstream 128593 4283412 ~ 4283611 (+) True G128175
TU145621 lncRNA upstream 140758 4271179 ~ 4271446 (+) True G128162
TU145615 lncRNA upstream 151914 4260063 ~ 4260290 (+) True G128156
TU145524 lncRNA upstream 248188 4140151 ~ 4164016 (+) True G128084
TU145507 lncRNA upstream 252315 4132956 ~ 4159889 (+) True G128079
TU145573 lncRNA downstream 19241 4432095 ~ 4439272 (+) True G128117
TU145584 lncRNA downstream 40349 4453203 ~ 4455234 (+) True G128125
TU145571 lncRNA downstream 49343 4462197 ~ 4466118 (+) True G128115
TU145588 lncRNA downstream 60824 4473678 ~ 4477775 (+) True G128129
TU145651 lncRNA downstream 102493 4515347 ~ 4515611 (+) True G128192
CI01000026_04407023_04410714.mRNA mRNA upstream 331 4406569 ~ 4411873 (+) True CI01000026_04407023_04410714
CI01000026_04398682_04402882.mRNA mRNA upstream 9133 4398504 ~ 4403071 (+) True CI01000026_04398682_04402882
CI01000026_04390431_04394954.mRNA mRNA upstream 16983 4389996 ~ 4395221 (+) True CI01000026_04390431_04394954
CI01000026_04367338_04389547.mRNA mRNA upstream 22565 4367141 ~ 4389639 (+) True CI01000026_04367338_04389547
CI01000026_04361551_04365574.mRNA mRNA upstream 46132 4361061 ~ 4366072 (+) True CI01000026_04361551_04365574
CI01000026_04414146_04416156.mRNA mRNA downstream 376 4413230 ~ 4416687 (+) True CI01000026_04414146_04416156
CI01000026_04418614_04423755.mRNA mRNA downstream 5221 4418075 ~ 4424315 (+) True CI01000026_04418614_04423755
CI01000026_04424762_04428710.mRNA mRNA downstream 11908 4424762 ~ 4428710 (+) True CI01000026_04424762_04428710
CI01000026_04497986_04501262.mRNA mRNA downstream 85072 4497926 ~ 4501699 (+) True CI01000026_04497986_04501262
CI01000026_04503901_04507434.mRNA mRNA downstream 91047 4503901 ~ 4508693 (+) True CI01000026_04503901_04507434
TU145592 other upstream 80119 4287873 ~ 4318645 (+) True G128133
TU145397 other upstream 649218 3752551 ~ 3762986 (+) True G127979
TU145006 other upstream 1751375 2659215 ~ 2660829 (+) True CI01000026_02659356_02660297
TU144890 other upstream 1985198 2393683 ~ 2427006 (+) False G127519
TU145596 other downstream 17708 4430562 ~ 4431201 (+) True G128137
TU145659 other downstream 142922 4555776 ~ 4556317 (+) True CI01000026_04556074_04556964
TU146089 other downstream 1536959 5949813 ~ 5950122 (+) True G128585
TU146105 other downstream 1571025 5983879 ~ 5991761 (+) True G128601
TU146291 other downstream 1913342 6326196 ~ 6326785 (+) False G128757

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066093 True 357 mRNA 0.49 3 NC_007118.7 29148714 ~ 29149228 (+)
tiger barb (Puntius tetrazona) TU79443 False 428 lncRNA 0.47 3 NC_056705.1 16613978 ~ 16614573 (+)