RNA id: TU149979


Basic Information

Item Value
RNA id TU149979
length 231
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G131859
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 8571102 ~ 8571332 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAGACTGAATTTGTTTGAAGAAGACGCACAGACATAGCCAGGGCGTGGCAACACAACGCAGCATCTCATTCCCCTATCAGGGAACAAGGTTACATACGTAACCTGAGACGTTCCCTTTCAAGTGGAACTCAACACTGTGTCATGGCGTTGATGCTATGGGAACTTCAATTCCAATGTCGCCAGGCCCAAGCCAAAGAGCCTGCCCACAAGGCTGTGTATAGGCACAGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU149101 lncRNA upstream 49660 8520774 ~ 8521442 (+) True G131108
TU149045 lncRNA upstream 73110 8486471 ~ 8497992 (+) False G131071
TU149047 lncRNA upstream 73110 8486471 ~ 8497992 (+) False G131071
TU149053 lncRNA upstream 73110 8486471 ~ 8497992 (+) False G131071
TU149052 lncRNA upstream 73110 8489984 ~ 8497992 (+) True G131071
TU149981 lncRNA downstream 966 8572298 ~ 8572531 (+) True G131861
TU149992 lncRNA downstream 2139 8573471 ~ 8573841 (+) True G131872
TU149993 lncRNA downstream 2792 8574124 ~ 8574323 (+) True G131873
TU149995 lncRNA downstream 7154 8578486 ~ 8578716 (+) True G131875
TU149997 lncRNA downstream 12402 8583734 ~ 8584115 (+) True G131877
CI01000026_08474877_08483134.mRNA mRNA upstream 87834 8474877 ~ 8483268 (+) True CI01000026_08474877_08483134
CI01000026_08454661_08461606.mRNA mRNA upstream 109181 8454661 ~ 8461921 (+) True CI01000026_08454661_08461606
CI01000026_08447474_08449558.mRNA mRNA upstream 120491 8447396 ~ 8450611 (+) True CI01000026_08447474_08449558
CI01000026_08421799_08434134.mRNA mRNA upstream 136909 8421683 ~ 8434193 (+) True CI01000026_08421799_08434134
CI01000026_08313929_08318869.mRNA mRNA upstream 252211 8311795 ~ 8318891 (+) True CI01000026_08313929_08318869
CI01000026_08944583_08947981.mRNA mRNA downstream 373194 8944526 ~ 8947993 (+) True CI01000026_08944583_08947981
CI01000026_08950735_08960908.mRNA mRNA downstream 379331 8950663 ~ 8961146 (+) True CI01000026_08950735_08960908
CI01000026_09076625_09079154.mRNA mRNA downstream 503884 9075216 ~ 9079338 (+) True CI01000026_09076625_09079154
CI01000026_09175446_09178464.mRNA mRNA downstream 603917 9175249 ~ 9178488 (+) True CI01000026_09175446_09178464
CI01000026_09339450_09352303.mRNA mRNA downstream 768118 9339450 ~ 9353177 (+) True CI01000026_09339450_09352303
TU149067 other upstream 64315 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 271688 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 382029 8188374 ~ 8189073 (+) True G130967
TU148442 other upstream 1474450 7095053 ~ 7096652 (+) True G130552
TU146290 other upstream 2244317 6326278 ~ 6326785 (+) True G128757
TU150881 other downstream 997407 9568739 ~ 9569160 (+) False G132667
TU151441 other downstream 1588487 10159819 ~ 10161961 (+) True G133192
TU151694 other downstream 2499436 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 2673601 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 2904785 11476117 ~ 11476907 (+) False G133542

Expression Profile