RNA id: TU151606


Basic Information

Item Value
RNA id TU151606
length 203
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G133344
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10387042 ~ 10387244 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAACTCTATCCAAGATGAATCCATGTTTCTATTATTATACTTCATCTGTAGATAACGATACCGGTAATACAATACGCATCAATATATCTTCACTTTGTGCTTTGAACTTTTCAATGCGGAGCGCTGCCGCTGCGCGCTGTGACTCCATGATGCTTCAAGTGCATCATTCTGCACACGGGATGCGCATAAGCGCTTTGTGCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151601 lncRNA upstream 5284 10381554 ~ 10381758 (+) True G133339
TU151600 lncRNA upstream 5493 10381254 ~ 10381549 (+) True G133338
TU151598 lncRNA upstream 13087 10373398 ~ 10373955 (+) True G133336
TU151513 lncRNA upstream 31565 10354819 ~ 10355477 (+) True CI01000026_10351923_10354175
TU151592 lncRNA upstream 42976 10343711 ~ 10344066 (+) True G133330
TU151635 lncRNA downstream 128176 10515420 ~ 10515648 (+) True G133373
TU151646 lncRNA downstream 165716 10552960 ~ 10628076 (+) True G133383
TU151669 lncRNA downstream 397548 10784792 ~ 10785562 (+) True G133406
TU151685 lncRNA downstream 498809 10886053 ~ 10895159 (+) True G133420
TU151691 lncRNA downstream 520231 10907475 ~ 10907675 (+) True G133426
CI01000026_10351923_10354175.mRNA mRNA upstream 30347 10351403 ~ 10356695 (+) False CI01000026_10351923_10354175
CI01000026_10315650_10317985.mRNA mRNA upstream 69052 10315079 ~ 10317990 (+) False CI01000026_10315650_10317985
CI01000026_10265012_10268157.mRNA mRNA upstream 118494 10264945 ~ 10268548 (+) True CI01000026_10265012_10268157
CI01000026_10200749_10202405.mRNA mRNA upstream 184528 10198593 ~ 10202514 (+) True CI01000026_10200749_10202405
CI01000026_10136110_10149386.mRNA mRNA upstream 237576 10135996 ~ 10149466 (+) True CI01000026_10136110_10149386
CI01000026_10453245_10454111.mRNA mRNA downstream 65881 10453125 ~ 10454176 (+) True CI01000026_10453245_10454111
CI01000026_10455059_10456945.mRNA mRNA downstream 67815 10455059 ~ 10457563 (+) True CI01000026_10455059_10456945
CI01000026_10458602_10465979.mRNA mRNA downstream 71358 10458602 ~ 10466513 (+) True CI01000026_10458602_10465979
CI01000026_10468478_10482863.mRNA mRNA downstream 81234 10468478 ~ 10482955 (+) True CI01000026_10468478_10482863
CI01000026_10521984_10543018.mRNA mRNA downstream 134740 10521984 ~ 10543108 (+) True CI01000026_10521984_10543018
TU151441 other upstream 225081 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 817882 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 1880255 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2087628 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2197969 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 683524 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 857689 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 1088873 11476117 ~ 11476907 (+) False G133542

Expression Profile