RNA id: TU151691


Basic Information

Item Value
RNA id TU151691
length 201
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G133426
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10907475 ~ 10907675 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGAAATCAAATTTTCCTTGATCTTTTGACATATAAGAGATCATTGTACTATAAAAATATCCTGTAAGTTTCAGAACTCAAAACTTCATTGTTAGTCCAAAAACAGCTTTTATTGAAACCAAGCTCAGAAAACAAGTGTTTTTACCATGTGTCCAGGGCTTGACATTAACACCCGCCAAAAGGGGGTGAATTTCAGCACTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151685 lncRNA upstream 12316 10886053 ~ 10895159 (+) True G133420
TU151669 lncRNA upstream 121913 10784792 ~ 10785562 (+) True G133406
TU151646 lncRNA upstream 279399 10552960 ~ 10628076 (+) True G133383
TU151635 lncRNA upstream 391827 10515420 ~ 10515648 (+) True G133373
TU151606 lncRNA upstream 520231 10387042 ~ 10387244 (+) True G133344
TU151707 lncRNA downstream 211036 11118711 ~ 11119022 (+) True G133442
TU151708 lncRNA downstream 211973 11119648 ~ 11119877 (+) True G133443
TU151709 lncRNA downstream 212834 11120509 ~ 11120750 (+) True G133444
TU151725 lncRNA downstream 236634 11144309 ~ 11153397 (+) True G133454
TU151771 lncRNA downstream 285686 11193361 ~ 11193825 (+) True G133491
CI01000026_10871203_10872334.mRNA mRNA upstream 35136 10871203 ~ 10872339 (+) True CI01000026_10871203_10872334
CI01000026_10865287_10867398.mRNA mRNA upstream 40041 10865287 ~ 10867434 (+) True CI01000026_10865287_10867398
CI01000026_10862630_10863790.mRNA mRNA upstream 43067 10862630 ~ 10864408 (+) True CI01000026_10862630_10863790
CI01000026_10841434_10850234.mRNA mRNA upstream 57231 10841434 ~ 10850244 (+) True CI01000026_10841434_10850234
CI01000026_10831971_10837028.mRNA mRNA upstream 70410 10831971 ~ 10837065 (+) True CI01000026_10831971_10837028
CI01000026_10917489_10918872.mRNA mRNA downstream 8176 10915851 ~ 10919196 (+) True CI01000026_10917489_10918872
CI01000026_10930798_10950198.mRNA mRNA downstream 23123 10930798 ~ 10950313 (+) True CI01000026_10930798_10950198
CI01000026_10955581_10955874.mRNA mRNA downstream 47139 10954814 ~ 10955913 (+) True CI01000026_10955581_10955874
CI01000026_11012960_11021926.mRNA mRNA downstream 103665 11011340 ~ 11021926 (+) True CI01000026_11012960_11021926
CI01000026_11032284_11063044.mRNA mRNA downstream 124004 11031679 ~ 11063625 (+) True CI01000026_11032284_11063044
TU151441 other upstream 745514 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1338315 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2400688 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2608061 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2718402 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 163093 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 337258 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 568442 11476117 ~ 11476907 (+) False G133542

Expression Profile