RNA id: CI01000026_10917489_10918872.mRNA



Basic Information


Item Value
RNA id CI01000026_10917489_10918872.mRNA
length 2175
RNA type mRNA
GC content 0.38
exon number 3
gene id CI01000026_10917489_10918872
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10915851 ~ 10919196 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTATAAAACTAGGGCAACTGGAAAGAAAGAGAATGACAGAGAAAAAGCAGGAAAGAGAGCTATAACAGGTAAAGTTACTGGTGAGAAAGCTCTGCCAATGAGGAAAAGAATTTCTCAGTATTAGGTTTCATCTTTATAAACTCTTGTGTGAACCCAGCACACTTAATCTGAAATGATTTCTCATCACTTGAATTGACTCTTAGCACTCCATAGACAAGAGCAAATAATCGGAAAGAGGAGAGCAAGCAGCCAAATTGGTGAAATGATTCAGTGGAATCAATCTATGTAATCAGACACTGAATCATCTTCATCATCTTCCACTCATGTATGTGTCTTATCCCCCTAGTGAACTGATGTATTGCAGTTACGTAACTGGAAAGTTATCCAATCAGACAGAGATCATTTGTCATTCAAAATTATGAAAAAATAGGTTGTGTGAAGAATACACAGAAGAGTATTGGTGCCTGGTCAATAATGGTTCTAATTTCATATACAAACCCTCTGTACTTTATAATCCAGACACTAACAGAGGACATCATGCTGTTTATGGGTCAGCTCCGTTTTAATGCTAGTTCCTAAATTTCATCTAGTTATTAAGTTATAGTTTATAAGCTAGCTCACATTTAAAGGAACACTCCACTTTTTTTGAAAATGAATCTGATTAGACCGTTAGCATCTTGCTCAAAAATGACCAAAGAGTTTCGATATTTTTCCTATTTAAAACTTGACTCTTCTGTAGTTACATTGTGTACTAAGACCGACAGAAAATGAAAAGTTGCGATTTTCTAGGCCGATATGGCTAGGAACTATACTCTCATTCCGGCGTAATAATCAAGGAACTTTGCTGCCATACCATGGGTGCAGCAGGCGCAATGATATTGTCTTTCACAAATGTCTTTCACAAATGTCTCCATGGTTGCAAGGCACGCTCCCTCTGCAAGCAGGGGGTCACAGGCACTGTGTAATATCATTGCGCCTGCTGCACCCATGGTACGGCAGCAAAGTTCCTTGATTATTACGCCGGAATGAGAGTATAGTTCCTAGCTATATCGGCCTAGAAAATCACAACTTTTCATTTTCCGTCAGCCTTAGTACACAATGTAACTACAGAAGAGTCAAGTTTTAAATAGGAAAAATATCCGAAACTCTTTGGTCATTTTTGAGTAAGATGCTAACGGTCTAATCAGATTCAATGAACTATGCTAAGCTATGCTAAAAGTGGTACCGCCAGACCCGGAGATCGGCTGAATGGATTCGGAAACGGTAAAACTCAACTGTTTAACTCTAGGGGAGTTGGAAAATGAGCCTATTTACAAAAAAAGTGGAGTGTTCCTTTAAGACTGTTATTGTCAGGACAGTATATTTACTGCAGAGTTTTAACAAATAAAACAAGACCTATTAAGCTATTATTTCTATTTACATGTGTCCTCTTGCATTGTTAAATTCAAATTTTTGCTTTCAGAGTGTATCTGAGATCAATTTTAATCTCCACCTTTAAAGAGCCTTGCATGAATTCAACATGAATAATGTTGCTGTCATGAAAACATCTTACTATTGGTTTTAAAAGTGAAATTCAGGTTTGGGTAATGGACAGTCAAGGCTGTATGCTGTATAGTATTCAGTCTTTCATGTGCGTCAATGGCTGAAGTGCTCGGAAATCAATGCGCTGTCGCTTTAAACGAAGTGAAAGCCGATATGGACACCATATTGGACAACTTCGGGTCGGACAAACTTTTTCCCAATTCCAACCTGTTGGACCTAGAGGATCTGAATGAGAGCGATTTCTTATCCAATGTGGTGATATTGGCAGTTAAGTTAAGGCTATCTTACTGTGAGGTAAAGGATGCATGAGGTAACTTTGGGCAAACAAATTGCACAACAAAAAACATGCGTCTCCCTTGCGAAGACATCAAAAGTTATCGTAAGAAGGAATATTTCTACTAAAAATGTACTCCCCATCATTTTTTTCCAAATCAGACTTTTGTTTTTCCATGGAACATTAACGGTGAATTGTTTTGAGAATATCCCAGCCTCTTATTTTTATAAAGGTCTATTGAAAGTGAATTACGACTGGGACTGTTGAGGTCCAAAACGTAAACCGTTGACCAATGTGTGGGAAATAAAAAGTATTATAAAAGTGGTCTCTCCGGCTTATGCACTATATTCCAAGTCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151691 lncRNA upstream 8176 10907475 ~ 10907675 (+) True G133426
TU151685 lncRNA upstream 20692 10886053 ~ 10895159 (+) True G133420
TU151669 lncRNA upstream 130289 10784792 ~ 10785562 (+) True G133406
TU151646 lncRNA upstream 287775 10552960 ~ 10628076 (+) True G133383
TU151635 lncRNA upstream 400203 10515420 ~ 10515648 (+) True G133373
TU151707 lncRNA downstream 199515 11118711 ~ 11119022 (+) True G133442
TU151708 lncRNA downstream 200452 11119648 ~ 11119877 (+) True G133443
TU151709 lncRNA downstream 201313 11120509 ~ 11120750 (+) True G133444
TU151725 lncRNA downstream 225113 11144309 ~ 11153397 (+) True G133454
TU151771 lncRNA downstream 274165 11193361 ~ 11193825 (+) True G133491
CI01000026_10871203_10872334.mRNA mRNA upstream 43512 10871203 ~ 10872339 (+) True CI01000026_10871203_10872334
CI01000026_10865287_10867398.mRNA mRNA upstream 48417 10865287 ~ 10867434 (+) True CI01000026_10865287_10867398
CI01000026_10862630_10863790.mRNA mRNA upstream 51443 10862630 ~ 10864408 (+) True CI01000026_10862630_10863790
CI01000026_10841434_10850234.mRNA mRNA upstream 65607 10841434 ~ 10850244 (+) True CI01000026_10841434_10850234
CI01000026_10831971_10837028.mRNA mRNA upstream 78786 10831971 ~ 10837065 (+) True CI01000026_10831971_10837028
CI01000026_10930798_10950198.mRNA mRNA downstream 11602 10930798 ~ 10950313 (+) True CI01000026_10930798_10950198
CI01000026_10955581_10955874.mRNA mRNA downstream 35618 10954814 ~ 10955913 (+) True CI01000026_10955581_10955874
CI01000026_11012960_11021926.mRNA mRNA downstream 92144 11011340 ~ 11021926 (+) True CI01000026_11012960_11021926
CI01000026_11032284_11063044.mRNA mRNA downstream 112483 11031679 ~ 11063625 (+) True CI01000026_11032284_11063044
CI01000026_11075931_11078249.mRNA mRNA downstream 156588 11075784 ~ 11078456 (+) False CI01000026_11075931_11078249
TU151441 other upstream 753890 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1346691 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2409064 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2616437 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2726778 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 151572 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 325737 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 556921 11476117 ~ 11476907 (+) False G133542

Expression Profile