RNA id: TU151771


Basic Information

Item Value
RNA id TU151771
length 438
lncRNA type intronic
GC content 0.27
exon number 2
gene id G133491
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11193361 ~ 11193825 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGGGGTTAGTACAATTTTTATTCAGCAACGATGCATTAAATTGATGAAAAGTGATAGTCAAGACACTTACAATATTATAAAAGATTTATATTTGAAATAAATGCTGTTCTTTTGAACTATTAATTAAAGAATCATGAAAAAAATGTATCAGTTTCCATAAAGTTATTATGCAGCACAACAGTTTTTAACTGTGATAAGAAAGGTTTCTTGATGATTTCTGAAGGATCATGTGACACTGAAGACTGGAGTAATGGCTGCTGAAATCACAGGAATAAATAATATTTTAAAATATATTTAAAAAGAAAACATTTAAGATTGTCATAATATTTTTCAATCTTGCTGTTTTTACTGTATTTTTGATCAAATAATTGCAGTCTTGGTGAGAATAAGAGACTTCTTTACAAAAAAAAAAACAGTAGCTACCCTAAACATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151725 lncRNA upstream 39964 11144309 ~ 11153397 (+) True G133454
TU151709 lncRNA upstream 72611 11120509 ~ 11120750 (+) True G133444
TU151708 lncRNA upstream 73484 11119648 ~ 11119877 (+) True G133443
TU151707 lncRNA upstream 74339 11118711 ~ 11119022 (+) True G133442
TU151691 lncRNA upstream 285686 10907475 ~ 10907675 (+) True G133426
TU151781 lncRNA downstream 62184 11256009 ~ 11256267 (+) True G133501
TU151796 lncRNA downstream 127040 11320865 ~ 11321130 (+) True G133514
TU151797 lncRNA downstream 127430 11321255 ~ 11321553 (+) True G133515
TU151799 lncRNA downstream 127979 11321804 ~ 11324137 (+) False G133516
TU151798 lncRNA downstream 129530 11323355 ~ 11324137 (+) True G133516
CI01000026_11075931_11078249.mRNA mRNA upstream 114905 11075784 ~ 11078456 (+) False CI01000026_11075931_11078249
CI01000026_11032284_11063044.mRNA mRNA upstream 129736 11031679 ~ 11063625 (+) True CI01000026_11032284_11063044
CI01000026_11012960_11021926.mRNA mRNA upstream 171435 11011340 ~ 11021926 (+) True CI01000026_11012960_11021926
CI01000026_10955581_10955874.mRNA mRNA upstream 237448 10954814 ~ 10955913 (+) True CI01000026_10955581_10955874
CI01000026_10930798_10950198.mRNA mRNA upstream 243048 10930798 ~ 10950313 (+) True CI01000026_10930798_10950198
CI01000026_11203781_11212074.mRNA mRNA downstream 9956 11203781 ~ 11212582 (+) True CI01000026_11203781_11212074
CI01000026_11239339_11240254.mRNA mRNA downstream 45514 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11241496_11246081.mRNA mRNA downstream 47671 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11262923_11264188.mRNA mRNA downstream 67256 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11266022_11278889.mRNA mRNA downstream 72197 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
TU151694 other upstream 114281 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1031400 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1624201 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2686574 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2893947 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU151777 other downstream 51108 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 282292 11476117 ~ 11476907 (+) False G133542

Expression Profile