RNA id: CI01000026_11262923_11264188.mRNA


Basic Information

Item Value
RNA id CI01000026_11262923_11264188.mRNA
length 2704
RNA type mRNA
GC content 0.38
exon number 5
gene id CI01000026_11262923_11264188
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11261081 ~ 11264534 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATATAAACTCAACTAATGTTATAGACTGACACTCTTTCCCTCTAATTTCATTTGAACGTTCTGCTGCACACGGTAAGGTGAGTCTCTATCATTCTATCCATCTCTAGGGTTTAGCACTCTAACATTTGAGCATGCCATAGATCTTCAAAAGATCTCGCTCATGCTGAGCAGCCAGACACAGCCAAGAAATCAGAGCAATAAGCTCGATAATATGCTTGTGTACTGGAGGAAGGTCCTAGAGATAAAACTAACAGGCTAAGTGGCTTTTGCCTATGATATAATGCTGTTTTTGTTATTGTAGAGATTATGAATATGTTTTGATGTCTTCTTTATGGATGATCAATTTTAACTTTTTAAACCATTGTAATGTCAAATGCTAAAAAGTTTTTATTAGGCCCCTAATTTGATTTTTTATATAGTCTATATATCATTAAGCACATTTTTTTATACATTCAAAGCATACACTTTTAAAAATAAAGGTTATTTATTTGCATCTATGGTTCCATGAAGAAGCTTTAACATTCATGGAACCTTTCCATTACACAATAAGTTCTTTATAGTGGAAAAAGGTTCTTTAGATTTTTAAAATGTTCTTCACACTAAGAAAAAAAAAAACAGTAACACTTTAGTATGGGGAACACATATTCACTATTATGAATATAACTTTTCCCTCAGTAAGCTCCTAATTTACTGCTTATTTAATAGTTAGTAAGGTAGTTGTTGAAGTGGTTAAGTTCAGGTATTGGGTAGGATAAAGGGATGTAGAATATGGTCAAGCAGAATAAGGCATTAATATGTGCTTTATAAGTACTAACAAACAGCCAATGCACAGGCTAATAAGCAACTAGTTAAAAGTGATAATTGCTCCCCATACTGAAGTGTTACCTCTTTTCTTTTAAGAACTGAAAGGTTCTTTGCAGATCTAAAAATTGTTCTTCTATGCTTTTGGAACCTTTATTAGTGTATCACTAATAAAGTGTGAGTGTATCACCACATATTGCAGATTACCTTCATACATCTGATGATATATGCATGTATGGAGACCACAACTCATTTTAGAAAACAGAACGTCCTAACTGAGTCCACGTTCAATCCAAAATCTTTTTTTTTGGCAGGAAAAGTATAGAACTAATATAGTTCTTCAGACTAGCAGAAAGTATTTTTACAGTTGTGGAGGGTTTCAGCTGTTAGGTGTTGAAGCCGAGGAGATTCTTCAAGAGGCAGCAAGTTGACTGTCAGCTGTCTCATCTTCTGTTTTGGGTGCAGACCACTTCCTACAAAGGAACACTAAAAAAAGAGCACAAGACAACTGCTTCTCAAATTCAAACCCTTAAACACCTAACATTTCTGTGGGTACTGACACTTACACACACCCATGTACACCAGCCGTCTCTCTTTCACATTATCCCAAGACAAATTTAGACCTGCTACAGGAACAGTGACTGAATACAAATTGTTTCCATTAGATTGAAGGCAGCGACACCCCCTCCTGCCACCCACAGGCATCTTCACCTTCACAGGGGTCGCCACAAAGAGACCAGCAAGATGTCTGAGTATGTATTGAGTTACAACATCATGATGTTTGTGTGCTGTGAAAATGATTGTATCAATCAGTCCTCGATCACTAAACTTATCAAATACATTTAGCGTCAAGCTCCAATCAAATGATCATTTTGTATTTATTATGATACACACTAGAATACATGCCTAAATAATACAATTATCAAAAGCACAGTGCTTTTTCTGGAGTTCCATCTCTCAGCCATAATCATCCCAGTCACTGAATGATTCTTTCTGTGCTCTCTGAAATTGTAAACATTTGCTTTCTGATAGGAAAAAGATGACGTCCAGCCGTAGGCACCATTTGAAGAGCTTGTTGCTTCAGATCGCTCATGGGCTTTTGGAGGAAGAGGCAGCTGAGGCAGAACAAGAAAAACAACAATACATGGAAGAGAACTGCCCTGCTCTCTCACTGCCTGGAAGCATGCAGGAACTACAGGAACTGTGTAGGAAGTTGCACCAGCAGATTGATGCCATTGATGAACAAAGATACGATATGGAGACCAAAGTGGCCAAGTCAAACAAGGAGATTGATGATCTGAAGATAAAGGTTCAGGACCTGAAAGGTAAATTTAAGAAACCCGTTCTGAAGAAAGTGCGTATGTCTGCTGATGCCATGCTGCAGGCCCTGCTGGGCTCCAAACACAAAGTGTCTCTGGACCTGAGAGCCAACCTTAAACAGGTCAAGAAAGAGGTCAAGGAGGAGGAGAAGGAGGCAGTGGGAGACTGGCGTAAAAACATCGAGGATAAGGCCGGTATGGATGGCAGGAAGAAGATGTTTGAGTCTGAGGCCTAAATCTATTTTTCTTCAACAATTTTACATTTCCATTCAATGATTTATTCGGTTAGGTTGTCTTAATTAGGCTGTCTTAATTCTTGTGGTCTTCAGGGTTTTGAGAGATAAAAGTGGTAATGTTACAGTATCTATTGTGTGACGTTATGTTACAGATGGTAAAAGTAATGTACCGTATGAAGGAGGTTTTGATGTATGTGATGGTTGGTTTTGCAGCTGAGGCTTTAAATTGGTAAAAATTTATAAACAATCTGATTTTGGCCCTTTGCAATTAGAATGTATAAATTGACTTTGGTCAGTAAAACGCATTTAAATACTCAAAACAGTATTGAGAGGAGCTGCTGTAAAA

Function

GO:

id name namespace
GO:0060048 cardiac muscle contraction biological_process

KEGG:

id description
K12043 TNNI2; troponin I, fast skeletal muscle

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151781 lncRNA upstream 4814 11256009 ~ 11256267 (+) True G133501
TU151771 lncRNA upstream 67256 11193361 ~ 11193825 (+) True G133491
TU151725 lncRNA upstream 107684 11144309 ~ 11153397 (+) True G133454
TU151709 lncRNA upstream 140331 11120509 ~ 11120750 (+) True G133444
TU151708 lncRNA upstream 141204 11119648 ~ 11119877 (+) True G133443
TU151796 lncRNA downstream 56331 11320865 ~ 11321130 (+) True G133514
TU151797 lncRNA downstream 56721 11321255 ~ 11321553 (+) True G133515
TU151799 lncRNA downstream 57270 11321804 ~ 11324137 (+) False G133516
TU151798 lncRNA downstream 58821 11323355 ~ 11324137 (+) True G133516
TU151803 lncRNA downstream 67532 11332066 ~ 11332275 (+) True G133519
CI01000026_11241496_11246081.mRNA mRNA upstream 15000 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11239339_11240254.mRNA mRNA upstream 20648 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11203781_11212074.mRNA mRNA upstream 48499 11203781 ~ 11212582 (+) True CI01000026_11203781_11212074
CI01000026_11075931_11078249.mRNA mRNA upstream 182625 11075784 ~ 11078456 (+) False CI01000026_11075931_11078249
CI01000026_11032284_11063044.mRNA mRNA upstream 197456 11031679 ~ 11063625 (+) True CI01000026_11032284_11063044
CI01000026_11266022_11278889.mRNA mRNA downstream 1488 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
CI01000026_11298219_11305000.mRNA mRNA downstream 33685 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11403059_11415298.mRNA mRNA downstream 138525 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11436071_11446054.mRNA mRNA downstream 170967 11435501 ~ 11446322 (+) True CI01000026_11436071_11446054
CI01000026_11456632_11473446.mRNA mRNA downstream 192098 11456632 ~ 11473653 (+) True CI01000026_11456632_11473446
TU151777 other upstream 6008 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 182001 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1099120 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1691921 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2754294 8501408 ~ 8506787 (+) True G131077
TU151829 other downstream 211583 11476117 ~ 11476907 (+) False G133542

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066420 False 999 mRNA 0.43 6 NC_007118.7 39402864 ~ 39406763 (+)