RNA id: CI01000026_11266022_11278889.mRNA


Basic Information

Item Value
RNA id CI01000026_11266022_11278889.mRNA
length 1723
RNA type mRNA
GC content 0.49
exon number 13
gene id CI01000026_11266022_11278889
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11266022 ~ 11278899 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCCAGCTCAATCCTACGAAGACATTCCAGCAAAAGGGGATTGGAGAACCTCCAGAGGATCACTGCTCAGCGCAGTCTGGAGGATGCAGAAGAAATAGAGAGAGAACGACGACGACGTGCAAGAGCCAGTACCTCTTCTGAGGCTTCTCAAGCTACTGGGACCCCACAGGACAGCCCTTGCACTGCACAGGCTCTGGACAACCAGGGTCAGAATGATCTGGTTCCAAGCTGTCAATCCTCTTTGGAAGAGGACGAAGGCTTCAGTGATTGGACACATCTGAGCAGGCGCAAACAGGGACAAACGGAACATAAAGATATAGAAACACATCTCAACGGCTCTCGTCACTCAAAACTTCAGCTCTGTTCCAGCTCTGCTCAACATAGCATAAACATTGATGACAGCACCCCATTTATACAGACTCAACCCCCCTTTTCAAATCAGCAAAACCTGGATGAGGATGGTGATGATGAAGACTGGGGAGCCAGAGAGCGGGAAAGAAGGGCTAACATTAAGGCAGCAGAGAGGGAGGAAGGAGAGATCAGACGGTGGTGTGCAGAGGAGGACGATCCAAGAAGGATGAAAGGTCATGAATCATCTTTCTGGAAAAAACAAAATCAGAGGAGTGATATGGATGAGAAGAGAGAAAAGAAGGTAGCGATGAAGATATCCTACACCTCCACAGTCCTCCTCCAACAGAATGGGAGACAGCACAGCACAAATGGACAAGAGGGGAGGAGAATAAATGACAGAGAACTGAAGATACAGAGTAACATGGATTCAGCAGCTCTCAGCAGACCAGATAGTGTGTCAGAGGAAGTGTTTATAAACAACAGTGAGGAGAACCATCAGCACAGAGAAATGGGGGATCAGACTCATGAGGAGGTTCAGCACAGAGAAACAGAAGATCAGACTCATGAGGAGGTCCAGCACAGAGAAACGGGGGATCAGACTCATGAGGAGGTCCAGCACAGAGAAACGGGGGATCAGACTCATGAGGAGGTCCAGAGGATGAGAGAGGAGGAGAGAGAGAGGAAGAGGAGGGGTGTGATGGAGAAGTTAAAGAGGTTGAGCATATCCAGCGGAGATCCAGAGGAGCCCTTCAGTCCTCTCAGCCCCAGGAGCCCCTCCTACATGGCTGAGGGTGAGGATTGGCAATCAGAAGGTACAAGCTCGATTACTGAGAGGACTGAGTCTCTAAACCGCTCCATTAAAAAAAAGAACAGCATAAAGAAGACCCAGCCTCCCACGATCATCTCGAAGTTAGATGGTAGATTGGAGCAGTACAACCATGCCATTGAGGAGTGCTATAAAGAGGGGAACGTAGTCAAGCCAGTGGATGTCCCAACACCACCAGAGCCCGTATCTGCTAAGAAGACCCTCTTTGAGGCGGGAGAAGCCTGGAATCAGAATTCAGCGAAGGCTGTGTCCTCTAAGGATACAGAGGGAATGAAGGTGGGCGTGGCAGATCTAATTAACCAGTGGGTGAAAGGAAACTCTGATGTTAACACCAAGAGCCCCTCCTCCAAAGCAGCTTGTCAAGATGTTAAGGCTGGTGAGGTGCGCAACATAAAATCCATGTGGGAGAATCTGGGAGATGCTTCTTCACAGGATAAACCATGCACAAAGGGATCGGCTGGCAAAAGGTACAAATTTGTTGAGAATGGGCACGGGAAGTATGAGAAGGTCTTCATTGATAACGACACAAACTAAGGATCAAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151781 lncRNA upstream 9755 11256009 ~ 11256267 (+) True G133501
TU151771 lncRNA upstream 72197 11193361 ~ 11193825 (+) True G133491
TU151725 lncRNA upstream 112625 11144309 ~ 11153397 (+) True G133454
TU151709 lncRNA upstream 145272 11120509 ~ 11120750 (+) True G133444
TU151708 lncRNA upstream 146145 11119648 ~ 11119877 (+) True G133443
TU151796 lncRNA downstream 41966 11320865 ~ 11321130 (+) True G133514
TU151797 lncRNA downstream 42356 11321255 ~ 11321553 (+) True G133515
TU151799 lncRNA downstream 42905 11321804 ~ 11324137 (+) False G133516
TU151798 lncRNA downstream 44456 11323355 ~ 11324137 (+) True G133516
TU151803 lncRNA downstream 53167 11332066 ~ 11332275 (+) True G133519
CI01000026_11262923_11264188.mRNA mRNA upstream 1488 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11241496_11246081.mRNA mRNA upstream 19941 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11239339_11240254.mRNA mRNA upstream 25589 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11203781_11212074.mRNA mRNA upstream 53440 11203781 ~ 11212582 (+) True CI01000026_11203781_11212074
CI01000026_11075931_11078249.mRNA mRNA upstream 187566 11075784 ~ 11078456 (+) False CI01000026_11075931_11078249
CI01000026_11298219_11305000.mRNA mRNA downstream 19320 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11403059_11415298.mRNA mRNA downstream 124160 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11436071_11446054.mRNA mRNA downstream 156602 11435501 ~ 11446322 (+) True CI01000026_11436071_11446054
CI01000026_11456632_11473446.mRNA mRNA downstream 177733 11456632 ~ 11473653 (+) True CI01000026_11456632_11473446
CI01000026_11483300_11485455.mRNA mRNA downstream 204401 11483300 ~ 11486080 (+) True CI01000026_11483300_11485455
TU151777 other upstream 10949 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 186942 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1104061 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1696862 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2759235 8501408 ~ 8506787 (+) True G131077
TU151829 other downstream 197218 11476117 ~ 11476907 (+) False G133542

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066423 False 2603 mRNA 0.43 13 NC_007118.7 39410180 ~ 39440071 (+)