RNA id: TU151798



Basic Information


Item Value
RNA id TU151798
length 525
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id G133516
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11321804 ~ 11324137 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTTACCTGCCAGCGTGGTCCAGCTTGTATATGTACAGTGGTTTTTCTGTCCCAGAGCACTGTGAGGTCTTCCCCAAGCAGATGCACAATGGTGTAGTATCCTGCTTGCCAGATATATACTTTCTTCCTGTCAATCACACTGGATGGATTAGGTTTTCCGCTGTCATTATCAAACACAATGAAGGAGCGACCCGCAGAGATGAGGAGTGATTTCCTGCAGATCACACCACTCTCAAAGCAGTCAACATTTTCTGCTGTGACAGACATCATTGCATCTAACGAGCTCTTGACCAAGTACACCTTGCATGCACCAATATAATCAAACAGGAACCCATCAAACGTTCGGTAGTGTCGATCTCCATAAGTAGTGCACATTGACGGACATGGGCGAAACTCACACTGGAACGTGCCATGCTGACACACACTGCAAAACACTCACAATCAGATCCTAGAAACAGCTTCATTACACATTTCCTCTCTTAACTTCTCCCTCAGGAGACACAAAAGTGAATGTTTTTGTGCTGAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151797 lncRNA upstream 1802 11321255 ~ 11321553 (+) True G133515
TU151796 lncRNA upstream 2225 11320865 ~ 11321130 (+) True G133514
TU151781 lncRNA upstream 67088 11256009 ~ 11256267 (+) True G133501
TU151771 lncRNA upstream 129530 11193361 ~ 11193825 (+) True G133491
TU151725 lncRNA upstream 169958 11144309 ~ 11153397 (+) True G133454
TU151803 lncRNA downstream 7929 11332066 ~ 11332275 (+) True G133519
TU151804 lncRNA downstream 9204 11333341 ~ 11333687 (+) True G133520
TU151805 lncRNA downstream 9736 11333873 ~ 11334103 (+) True G133521
TU151806 lncRNA downstream 11333 11335470 ~ 11336831 (+) True G133522
TU151808 lncRNA downstream 16502 11340639 ~ 11342488 (+) True G133523
CI01000026_11298219_11305000.mRNA mRNA upstream 18342 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11266022_11278889.mRNA mRNA upstream 44456 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
CI01000026_11262923_11264188.mRNA mRNA upstream 58821 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11241496_11246081.mRNA mRNA upstream 77274 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11239339_11240254.mRNA mRNA upstream 82922 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11403059_11415298.mRNA mRNA downstream 78922 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11436071_11446054.mRNA mRNA downstream 111364 11435501 ~ 11446322 (+) True CI01000026_11436071_11446054
CI01000026_11456632_11473446.mRNA mRNA downstream 132495 11456632 ~ 11473653 (+) True CI01000026_11456632_11473446
CI01000026_11483300_11485455.mRNA mRNA downstream 159163 11483300 ~ 11486080 (+) True CI01000026_11483300_11485455
CI01000026_11497016_11677778.mRNA mRNA downstream 172879 11497016 ~ 11677778 (+) True CI01000026_11497016_11677778
TU151777 other upstream 68282 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 244275 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1161394 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1754195 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2816568 8501408 ~ 8506787 (+) True G131077
TU151829 other downstream 151980 11476117 ~ 11476907 (+) False G133542

Expression Profile