RNA id: CI01000026_11436071_11446054.mRNA


Basic Information

Item Value
RNA id CI01000026_11436071_11446054.mRNA
length 4873
RNA type mRNA
GC content 0.45
exon number 7
gene id CI01000026_11436071_11446054
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11435501 ~ 11446322 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAAATATCGACCTAATCAAATGCATTAAAAGTCTCAAAATATCCACATTCATTATTATTATTTTGTTTTAATTATTTGTATTTTTGAATGCTCTAGCACACTTAGTTTCAGAAAGGGCTCTCAGTGTACTTTCATAACAACTAAACAGTTTTGGTCTGCCCCAAAATCTATACTATTTAAAAAAAAAACAAAAAAAAAAACATTTAATATGAAACTAAATGCTGTTGTTTTTTTTTTTCTCTCAGGTTGAGCCTGGAACCAGCTGTCCTCCAAGATGAACCCGTATGAGTGAACATGAGCCTATTCAGTAAGCTGTTAGCTTCCAGTGGTCAAAGCCATGCCTGAAGATTAGATTCTCCTCTTGCTTACAGCAAAACAAATATACAGAAGAATCTACATGACTCTTCATGTAGACCTTCCTGTGTTTGTCCTGCTGGATTGAGTCCTTCCTCCCCTACTATAATATCAGCTCTGTCCTTTTCATACCACTCCGTCTTGCACTTTCATGTCCACCTGGGAACATGCAGCTGCATTTGAGAATAGCTCCAACCTAGTCTCATGCGTCCAATGAGTGGAGAGTCAGACGGCCCCGCTCCTGAAAGAGTCTCACAGGCCTTCCCTTTGTCAGGCCCTGTGTCCTCCTCAGAGATGTCCTCACTGCAGTCACTAGGGCCAGTGCAGAGCTGGCTGGGTCAGGAGTTGGAGAAATGTGGCATAGATGCAATGATCTACACCCGCTATGTCCTTAGTCTGCTGCTGCACGACAGCTATGACTATGACCTGCAGGACCAGGAAAATGACATCTTCCTGGGCTGGGAGAAGGGAACAGGGAAGAAATGGGGGAAGAGCAAGAAGAAGGGAGGGACTGACCTTAGTCTTGAAGAGATGAAAAAACAAGCTGCTGTGCAATGTTTGCGTTCAGCATCTGATGAAAATTCTGGAATTGAAAGCTTGGTCGAGGAGCTTTGCTCTAAACTCAAGGATATTCAAAACAAACAGAAAGAAAAAGATAAGCAAGGAAATAAAAAATCTGATATATCTCAGTCTCCTGAACCAGATGAATCACTTTCTTCTAAGGACCAGGTTGAGATGTACTATGAAGCCTTTCCACCTCTATCAGAAAAACCTGTTTGTCTCCAAGAAATTATGACTGTGTGGAACAAAGCTAAAGCCTGCACATATTCCAGCTCATCATCATCTGCTGTCCCTCAAACAAGCACAGACACATCCTCTCCAAAAGACTGCACCAGCGAAGGTGAAGCCTTTAAAGACCGAACAGTTGATGCACCCAGTTCCACCACCACAACCAGCGAGAGGGCCCAGCAGCGACGCACTAAGAGGGAGAAGGAAAACCGATTCCATGGAACCGCAACAGGAGTGCCTGATGATCAGGTTGCTCCTCATAGTAAGAGGCAGGCCAGACACCGATCTGAGGGAAGGTTCCGTCCCAGATCGTGGTCCTCTGGCTCGAGTGAGGCTGGCTCAAGCTCTAGTGGTAATCAGGGTGACCAGACCCTTAGTTGCAAAGCAGTCCGCATAAGACACAAGTCTCGAGAGGTCAGCAGCAGAAACAAAAGAGGCCGAAGTGGCAGCGGACAGGTCAAACTGGCCCTTAAAGTCATCGACAAAGAGGAGCGGAAAAATGCACGTGGCAACATCAGTACCACTGGAGGCCCACCTAAGCAGCACCACTACATGAAAAAAGGCAAGAGACCTCTGAGGGAGATCCGCAAAGATGCTAATCTAGTTGAGGCACAGGAGTCAGGAGGAGCGGCCAATAAAAAGGAATATATGGAGGAGCCTCTTTGGTACACTGAGCCTATCTCTGAGTACTTTGTCCCTCTCAGTAGAAGTAAATTGGAGACAAAGTATCGGAGTAAAGAAGACTCTTCCAATGACTTAGCTATGTCCATTGATGTGGACTGTCTATCGGAGAGAATTCAAGGAATCTGCATTGCAAATTCTTGTTTTCAAAGGGCATACCTTGCAGCAGGCACTTTTGTGGATGGCCACTTCATTGAAGTGCCTGGTGAAGGTGATGAAGAGGCTCCTGAACTGAATGGGATTCCAAGCTGCCATCCTCCTGAAGATGGTCAAGATTTAGATGATGAGCATCTGTCTGAATTCACTCACTTCTATGAAGTTGATCTTTATCAATCCATATTGGATCCTAGTGCCTCAGATGCGGTACAAGAAAGTCGAATCCTGAACATGATTCGACAAAAGAGCATTGAGCGAAAACACTTTGAAGCAGGATGTGTAGTTTTAGATGGCCTTGAGCTGCAAGGGGAAAGTGCAATAAGGGTTGATTCTCTGGGAGCCTCAGAAGCAGATGTTTCCATCACTCAAAATATTGCCCAAGTCTGGGAGTGCTGTTCATCATCTAGCTTGGAGGATTTGGAGGGAGAAAGTTGTCCAGGTGACTCTCCAGTCAGACTCTCCCCAGTGTTGGACAGTGTTCCGTTTAGCAAAATATCTGGAGCTTTTGTAGGGCATCATCTCCAAGAAGCCAGTGGTAGCATCTCTGACCTAAACTCCTGCTTTTCTCTTTTTGAGTTGCAGTACGATAGCCCTTCCTTTTCTTTTCCCTGCGACTCACTCACGGGGGGTCAGGACAATGTAGATTCAAGTAGCTGTTTAGATCCACAAAGAAACAAACAATCCCGTTTGCTAATTTGGACCAAAAACAGTGCCTTTGATGAAACAGAACACTGCTCTAACTTATCAACGAGGACCTGCAGTCCATGGTCCCACTCAGAGGAGACACGGTCGGATAGTGAACAGATCAATGCTCCGGCAGATGAATCTGTTCAGTTTGGCAATGAAGAGGTCAGCTGTATCTCCCTTATCCCACCTTTATGCCTAGAGGAGGAGCTTTTAGATTTTTTTCAAGAAAACTCAAGTCACCAGCAGGAAGAAACAAGTGTAGGCGCAGAGTCCAACCAGCCCTTCAATAAGAAATCGAAATTGGAGTCTGTTTGTGGCATAGCATTAGAGCAGGATGAGAGTAAACTCTATAATGCTGTTGTGTTTTCAGATGTCTCAAATCAACAAAGTGATGAATACACCTCAGGGATAATAAAAGACATTTGGATGGCTATTGGAGACAGAGACTGTGTCTTAACACTTGGGGTAAAGAATACAGGGGAGCACTTGTTTTCAGAGGAGGCTACTGGCTACCAATGCAGCTGTCTTGACAAGGATGTAAAAGGTGAAATTCAAAAGAAAGCTGTGCAGTGTTCGGAATATCATCTTTGGGATGGACAGAAAGAGGATGAGGGACTTCATAAAAACAAGCTCTCTAAAATGAATGATGGGGATTACACAACACCGGCCAAGCCCTGGAATTGTAATTCACAGGATAGCACCTCATTTATCCTCGGTGGGGTTTATGGAGAACTGAAGACTCTAAGTGGTGACAGAGAATGGGCTATGGTTCCACCTGGTGATGCTTGTGGCAGTTTGTTGCAGTGTGCAGCAGCCACATCTTCTGACATGGTAACCATTGCAGGAGCAGATGTGTTCATGAACACGAGCAGTCGCTTTGCTCCTGGCCACAAGCCATTGTGGAGACCTCTTGTGTCCCTTGGTCAAAATGAGCAGGCTTCCAAGGGACCAGGGGATGGTTTGAATAAGGGATTTTCTGTTGTCTTCCATGAAGATTTACTGGGATCATGCGGAGGCTTCCGTGGAGAAGAGTCGGGACTGGATTACCCATTTTCATCCTTTGATTTAAACAACCCTTTTTCCCAGGTCCTGCATGTGGAGTGCTCCTTTGAGCCAGAGGATATGGCCTCGTTCAGCCCGGGATTCAAGCCAAAATCCATATTATGCTCAGACAATGAGCCCTTTTGCCCATGGTTATATGGCATCAACCGGACTCAGTATCGGGCCATTCGAATTTCCCCAAGGACTCATTTCCGGCCAATATCTGCCTCTGAACTGTCTCCAGGTGGGTGCAGTGAGTCAGATGTAGAGTCTGAGAAAGAGGAAGCGAGTCTTCCAGTTGGTCAAGCAGACCTCTTTGATGACCCACAGGCTGACCTCAAGCCTCTCGAGGAGGACGCAGAGTGTGAGGGCCCTTACTATGGGAAATCTGAGTTGGAGTCTGGGAAGTTCCTACCCAGATTAAAGAAGTCTGGCATGGAGAAGAGTGCCCAGACGTCACTCGATTCACAGGAGGGTGGGAGCACCCTTCTGCCGATTACTGAACAAGAGATTTGCGTACATTGTGAGACGGCAGTGGTTTCGACACCATGTTCTCATGTGCAGACCTCTGTTCTTCAACAAGAAGAATGCAGCAGAGAGACAGAGTCTTGCAAATGTGATGCAACTGATCAGATTCCTACAACTGGGAAGTCATTTGATGTTGCTCAAGATATGCATGAGTTTCCTCTGTTGAATTTTGGAGAACAGTGCTTAACTAATATGCAGCAAGAAGAGTGCTGGTGGCAGAGTACTCTATGCTCTCCTTTATTTCCAGGTTCTCAGTGCGGAGATTTTAGCTTCACTTTTACGTTTGATCAAGGATACACTATAACTGTGGTCCTACTGATTGTGCATGTGCTTGTGAACCTAGTCTCAGTCCTTCTAATAGTCTAAGTTTCTGTGACCGAACTATGAATACTCAGAAGTCAGGTTGAAAGCACTACGATTGCAACACCCCCTTCCCCTGCCAGATAATTTTGCTTTTTGTCTTATTTTTTATCTTCTAAATGACTTATAGAAGATAGTTGTGTGAGGTTTGGTGTGTTGAAAGAAAAAGTGCTTTTGTCCCCTACCATGCTGCTTTGAAAGCATCTTAAAGAAATAAGGCAGGGTAATATATTGAAAGTGTAATAATACAATAAGCAAACTAAAAAACAGATAA

Function

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151821 lncRNA upstream 40257 11395044 ~ 11395244 (+) True G133536
TU151794 lncRNA upstream 66202 11368840 ~ 11369299 (+) True G133512
TU151818 lncRNA upstream 73274 11361816 ~ 11362227 (+) True G133533
TU151813 lncRNA upstream 81050 11354162 ~ 11354451 (+) True G133528
TU151815 lncRNA upstream 85895 11349312 ~ 11349606 (+) True G133530
TU151828 lncRNA downstream 29795 11476117 ~ 11477544 (+) False G133542
TU151831 lncRNA downstream 29795 11476117 ~ 11476954 (+) True G133542
TU151858 lncRNA downstream 155880 11602202 ~ 11602886 (+) True G133564
TU151867 lncRNA downstream 212208 11658530 ~ 11659089 (+) True G133572
TU151890 lncRNA downstream 285489 11731811 ~ 11732814 (+) True G133594
CI01000026_11403059_11415298.mRNA mRNA upstream 19989 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11298219_11305000.mRNA mRNA upstream 130488 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11266022_11278889.mRNA mRNA upstream 156602 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
CI01000026_11262923_11264188.mRNA mRNA upstream 170967 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11241496_11246081.mRNA mRNA upstream 189420 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11456632_11473446.mRNA mRNA downstream 10310 11456632 ~ 11473653 (+) True CI01000026_11456632_11473446
CI01000026_11483300_11485455.mRNA mRNA downstream 36978 11483300 ~ 11486080 (+) True CI01000026_11483300_11485455
CI01000026_11497016_11677778.mRNA mRNA downstream 50694 11497016 ~ 11677778 (+) True CI01000026_11497016_11677778
CI01000026_11698637_11702653.mRNA mRNA downstream 252315 11698637 ~ 11703649 (+) True CI01000026_11698637_11702653
CI01000026_11705009_11707949.mRNA mRNA downstream 258687 11705009 ~ 11708076 (+) True CI01000026_11705009_11707949
TU151777 other upstream 180428 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 356421 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1273540 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1866341 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2928714 8501408 ~ 8506787 (+) True G131077
TU151829 other downstream 29795 11476117 ~ 11476907 (+) False G133542

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00066453 False 7888 mRNA 0.42 8 NC_007118.7 39664055 ~ 39678530 (+)