RNA id: TU151794


Basic Information

Item Value
RNA id TU151794
length 225
lncRNA type antisense_over
GC content 0.48
exon number 2
gene id G133512
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11368840 ~ 11369299 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACGTAAAGTCCAGTCCTCCAGTGGGATCTCAGAAGTAGTCGTCACTGTCAGATTGTTAAAATGACTTACATCTGCTGGCCAGTATTCCTCACATTTTATCCGTCCCTGCTCATTGCATTTGGTGAGCATGACAATAGTCTGCACGTTTTTCTCCCAGATCAGTCGCCAGAAGTCATTGACAGTGCAGGGCAGTGGCCCTTGGGCTGCGATAAACTCCTTCTTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151818 lncRNA upstream 6613 11361816 ~ 11362227 (+) True G133533
TU151813 lncRNA upstream 14389 11354162 ~ 11354451 (+) True G133528
TU151815 lncRNA upstream 19234 11349312 ~ 11349606 (+) True G133530
TU151814 lncRNA upstream 19916 11347963 ~ 11348924 (+) True G133529
TU151808 lncRNA upstream 26352 11340639 ~ 11342488 (+) True G133523
TU151821 lncRNA downstream 25745 11395044 ~ 11395244 (+) True G133536
TU151828 lncRNA downstream 106818 11476117 ~ 11477544 (+) False G133542
TU151831 lncRNA downstream 106818 11476117 ~ 11476954 (+) True G133542
TU151858 lncRNA downstream 232903 11602202 ~ 11602886 (+) True G133564
TU151867 lncRNA downstream 289231 11658530 ~ 11659089 (+) True G133572
CI01000026_11298219_11305000.mRNA mRNA upstream 63827 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11266022_11278889.mRNA mRNA upstream 89941 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
CI01000026_11262923_11264188.mRNA mRNA upstream 104306 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11241496_11246081.mRNA mRNA upstream 122759 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11239339_11240254.mRNA mRNA upstream 128407 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11403059_11415298.mRNA mRNA downstream 33760 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11436071_11446054.mRNA mRNA downstream 66202 11435501 ~ 11446322 (+) True CI01000026_11436071_11446054
CI01000026_11456632_11473446.mRNA mRNA downstream 87333 11456632 ~ 11473653 (+) True CI01000026_11456632_11473446
CI01000026_11483300_11485455.mRNA mRNA downstream 114001 11483300 ~ 11486080 (+) True CI01000026_11483300_11485455
CI01000026_11497016_11677778.mRNA mRNA downstream 127717 11497016 ~ 11677778 (+) True CI01000026_11497016_11677778
TU151777 other upstream 113767 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 289760 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1206879 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1799680 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2862053 8501408 ~ 8506787 (+) True G131077
TU151829 other downstream 106818 11476117 ~ 11476907 (+) False G133542

Expression Profile