RNA id: TU151818


Basic Information

Item Value
RNA id TU151818
length 412
lncRNA type antisense_over
GC content 0.33
exon number 1
gene id G133533
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11361816 ~ 11362227 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCCAGAAATGCGGTAAAAAATTGAAGTGATATAGTATTGGTCTGCAATGTGTACCAGTACCAGAATGATTTTTTCATTGAACACCAGTAATGAAAGTGAGTAATAAAAAATTTGATATAAAAATAAAAAAGAACTCAAACTTTTGTCTGTTCTTTTGTGTCATACTATTAATGACATATTAAGAACAAATTAATAATTATTAATAATATTTTGCATCATTGTGTTTCACTGAATTTCACTGAAATATGAAACAAACAAAACATTTAATGCCACAATTTATTTTTGAATGTGTGGTGATGTTTCCTTCTGGAGTTCTTATAGTCATTCTGGGGCAGGAACTGGAGCAGGAATCTCTGGGCATCTATGACAAACAGCTCTGCTACTGCTCTGGAACTGAGCAGCTCTGGGTCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151813 lncRNA upstream 7365 11354162 ~ 11354451 (+) True G133528
TU151815 lncRNA upstream 12210 11349312 ~ 11349606 (+) True G133530
TU151814 lncRNA upstream 12892 11347963 ~ 11348924 (+) True G133529
TU151808 lncRNA upstream 19328 11340639 ~ 11342488 (+) True G133523
TU151806 lncRNA upstream 24985 11335470 ~ 11336831 (+) True G133522
TU151794 lncRNA downstream 6613 11368840 ~ 11369299 (+) True G133512
TU151821 lncRNA downstream 32817 11395044 ~ 11395244 (+) True G133536
TU151828 lncRNA downstream 113890 11476117 ~ 11477544 (+) False G133542
TU151831 lncRNA downstream 113890 11476117 ~ 11476954 (+) True G133542
TU151858 lncRNA downstream 239975 11602202 ~ 11602886 (+) True G133564
CI01000026_11298219_11305000.mRNA mRNA upstream 56803 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11266022_11278889.mRNA mRNA upstream 82917 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
CI01000026_11262923_11264188.mRNA mRNA upstream 97282 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11241496_11246081.mRNA mRNA upstream 115735 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11239339_11240254.mRNA mRNA upstream 121383 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11403059_11415298.mRNA mRNA downstream 40832 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11436071_11446054.mRNA mRNA downstream 73274 11435501 ~ 11446322 (+) True CI01000026_11436071_11446054
CI01000026_11456632_11473446.mRNA mRNA downstream 94405 11456632 ~ 11473653 (+) True CI01000026_11456632_11473446
CI01000026_11483300_11485455.mRNA mRNA downstream 121073 11483300 ~ 11486080 (+) True CI01000026_11483300_11485455
CI01000026_11497016_11677778.mRNA mRNA downstream 134789 11497016 ~ 11677778 (+) True CI01000026_11497016_11677778
TU151777 other upstream 106743 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 282736 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1199855 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1792656 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2855029 8501408 ~ 8506787 (+) True G131077
TU151829 other downstream 113890 11476117 ~ 11476907 (+) False G133542

Expression Profile