RNA id: TU151831


Basic Information

Item Value
RNA id TU151831
length 470
lncRNA type inter_gene
GC content 0.40
exon number 3
gene id G133542
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11476117 ~ 11477544 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCATTATCCTGTTGTTATCAGTATTATCTTGAAGCAAAATCTGCAGCCATGCGTCAATATTGTCTTTGTCTTTTTATTGGACTTTTGGCCGTTGCATTCCTCCAGTCTGGTGTACTGGCCAACAATGCCAATTCGCCAGACGAATGCTGTTTTAAGTATTATGCGAGAAAAATCCCCATCGCTAAAATTACTTCCTACATGGAAACAAGAATGGATTGCGCTAAGGCTGGAATCATTCTTGTCACACAGAAGAGTCTCCGTATCTGTGTGAACCCTGAGCTGAGCTGGGTGAAGAGTGCCATTAAAATGATCGATGATCGTGATTTTTAGTGATGCAGTTGTGGCGATGATCTGCATACTCAAAGGAGTGATTTAACTTGTTTCCTAACTGAAGAATTAGCTCAGTAACCTTCCTCCTATGATCTGTCAGTTTTTTTTTTTTTTTTTTCATCATTATCATGTGAGGCAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151821 lncRNA upstream 80873 11395044 ~ 11395244 (+) True G133536
TU151794 lncRNA upstream 106818 11368840 ~ 11369299 (+) True G133512
TU151818 lncRNA upstream 113890 11361816 ~ 11362227 (+) True G133533
TU151813 lncRNA upstream 121666 11354162 ~ 11354451 (+) True G133528
TU151815 lncRNA upstream 126511 11349312 ~ 11349606 (+) True G133530
TU151858 lncRNA downstream 125248 11602202 ~ 11602886 (+) True G133564
TU151867 lncRNA downstream 181576 11658530 ~ 11659089 (+) True G133572
TU151890 lncRNA downstream 254857 11731811 ~ 11732814 (+) True G133594
TU151893 lncRNA downstream 256791 11733745 ~ 11734005 (+) True G133596
TU151906 lncRNA downstream 274211 11751165 ~ 11752175 (+) True G133608
CI01000026_11456632_11473446.mRNA mRNA upstream 2464 11456632 ~ 11473653 (+) True CI01000026_11456632_11473446
CI01000026_11436071_11446054.mRNA mRNA upstream 29795 11435501 ~ 11446322 (+) True CI01000026_11436071_11446054
CI01000026_11403059_11415298.mRNA mRNA upstream 60605 11403059 ~ 11415512 (+) True CI01000026_11403059_11415298
CI01000026_11298219_11305000.mRNA mRNA upstream 171104 11298219 ~ 11305013 (+) True CI01000026_11298219_11305000
CI01000026_11266022_11278889.mRNA mRNA upstream 197218 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
CI01000026_11483300_11485455.mRNA mRNA downstream 6346 11483300 ~ 11486080 (+) True CI01000026_11483300_11485455
CI01000026_11497016_11677778.mRNA mRNA downstream 20062 11497016 ~ 11677778 (+) True CI01000026_11497016_11677778
CI01000026_11698637_11702653.mRNA mRNA downstream 221683 11698637 ~ 11703649 (+) True CI01000026_11698637_11702653
CI01000026_11705009_11707949.mRNA mRNA downstream 228055 11705009 ~ 11708076 (+) True CI01000026_11705009_11707949
CI01000026_11756587_11788914.mRNA mRNA downstream 279633 11756587 ~ 11789072 (+) True CI01000026_11756587_11788914
TU151777 other upstream 221044 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 397037 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 1314156 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1906957 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2969330 8501408 ~ 8506787 (+) True G131077

Expression Profile