RNA id: TU151708


Basic Information

Item Value
RNA id TU151708
length 230
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G133443
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11119648 ~ 11119877 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAAGTGGCAGACATGTTACTTACTTGTTCAGATGACATTTTCCGGTGAAAATTCTTATTTTGGTCATACTTCCAAGACTACAATCTGTGATTCTGAAGTACAGTATCCACACCGGTGTGGTGACTGACGGCAAACATTAGATTCATCCGCGCTGAGGAGCCGTGCCGATGCACAAGCCACGTAAAGATGATAATTCCGCATCCTTGCTAAATTAAACATTTTCTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151707 lncRNA upstream 626 11118711 ~ 11119022 (+) True G133442
TU151691 lncRNA upstream 211973 10907475 ~ 10907675 (+) True G133426
TU151685 lncRNA upstream 224489 10886053 ~ 10895159 (+) True G133420
TU151669 lncRNA upstream 334086 10784792 ~ 10785562 (+) True G133406
TU151646 lncRNA upstream 491572 10552960 ~ 10628076 (+) True G133383
TU151709 lncRNA downstream 632 11120509 ~ 11120750 (+) True G133444
TU151725 lncRNA downstream 24432 11144309 ~ 11153397 (+) True G133454
TU151771 lncRNA downstream 73484 11193361 ~ 11193825 (+) True G133491
TU151781 lncRNA downstream 136132 11256009 ~ 11256267 (+) True G133501
TU151796 lncRNA downstream 200988 11320865 ~ 11321130 (+) True G133514
CI01000026_11075931_11078249.mRNA mRNA upstream 41192 11075784 ~ 11078456 (+) False CI01000026_11075931_11078249
CI01000026_11032284_11063044.mRNA mRNA upstream 56023 11031679 ~ 11063625 (+) True CI01000026_11032284_11063044
CI01000026_11012960_11021926.mRNA mRNA upstream 97722 11011340 ~ 11021926 (+) True CI01000026_11012960_11021926
CI01000026_10955581_10955874.mRNA mRNA upstream 163735 10954814 ~ 10955913 (+) True CI01000026_10955581_10955874
CI01000026_10930798_10950198.mRNA mRNA upstream 169335 10930798 ~ 10950313 (+) True CI01000026_10930798_10950198
CI01000026_11203781_11212074.mRNA mRNA downstream 83904 11203781 ~ 11212582 (+) True CI01000026_11203781_11212074
CI01000026_11239339_11240254.mRNA mRNA downstream 119462 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11241496_11246081.mRNA mRNA downstream 121619 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11262923_11264188.mRNA mRNA downstream 141204 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
CI01000026_11266022_11278889.mRNA mRNA downstream 146145 11266022 ~ 11278899 (+) True CI01000026_11266022_11278889
TU151694 other upstream 40568 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 957687 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1550488 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2612861 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2820234 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU151777 other downstream 125056 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 356240 11476117 ~ 11476907 (+) False G133542

Expression Profile