RNA id: CI01000026_11032284_11063044.mRNA



Basic Information


Item Value
RNA id CI01000026_11032284_11063044.mRNA
length 2722
RNA type mRNA
GC content 0.46
exon number 12
gene id CI01000026_11032284_11063044
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 11031679 ~ 11063625 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CCATATAATGGCAACTAATTTAAAAAAAGAGTGCAGAGGGGGAAAAAATAATATTGGCTTCAAAGAGTCAAGGCTTTCAGATGACACACTTCCTATGACAATTCCCCAATGCACTGAAGCAAAAAGATAATTATACACAATAATGTATTCAATGACAATTGATAAATAGTAATAGCTTTTTTTTCACATACAGCCAGGTATTTCTTTTGTTGAGAGGTGCGTTGAAACATTGATGCAAGTTGTGTTGAAAGGGCCATCAGACTTCCTTTGACAGCATCTCGAGATATGGGGAGTCAGTCATCATTATACACAAATCCTCTGTGACAGCTGAGTCACATTCACATAGATCCTAAACTGCTACACATCAAATCAGTGAAATGACAGTACATCACAATCCCCTGTTCAGTACTTGCATCTTTCCACCCTTTTCATCCTTTCATTCCAGTCCCTCCTTCCTCTCTTCCCACTGGCCCAGAGCAGAACTCATCTCCTCATTTTAAGACTAAAAAGCTTCCGAGGGCTTTATTAGCAGAGCAGAGAACTGCAGCATGAATCAGAGCTTTTCAGAGTGATTGTGGCAGCATTTCTGATCTCAGCTCAGTGTTATGAAGTTGCTGCCAAATAATTACCAGTTCAAGCAAGGGGAATGTCTGATCCGAGGCCAGGGCTATGGAGTTTTCATTGGTCATGGAATAGGTTGTCCATGCCCCAGAGCAGCATTAAGGGGCAGGATGTCACCAGAGTGTGAGGAATCATGTGCATTCATTACTTTTGCTGCAGATGTGTTATTTACAGCTACAACAGCTGATCGATTCTACAGGATTGATCGAGCTCAAGAGCATCTTAACTACGTGACTGAGATTTCTCAGGATGAGCTGTTCGTTTTGGATCCAGAACTAGTTGTCACAGAGACGGTCAGCACATCGCCAGGCATGCCAGACCTGGTGGACTCTGGTGATGTCCCGTCCGATCCACGAAAATTTGCCTTCCCATCATCCTCCTCTTCTCCACCAAACTCACCTGGACCTAGGGCTGCAGAGCTCCAAAGGAAGCGTGTTTCCAGTGACAGTTCTGTGGCAGAAGCACTTGCACACAGTGACTCGCTCAGATCAACCAAAGCAGCTCTCAGCAGGGTGGGGGGTGTTCATCGCTCAAATACAACAGCAGCAGATTTCAAACCTACCAGCAGGTTTGAGAAGAGCACCCTGAACAATGCAAACTCTGCTTCTGCCTGTCAGGAGAGGGCATGTGCCAAGGCTATGGTGTTTTCCGCTCTCTTGGCACTGGTAGGGGAAGTAGAGAGAGTAGGAAAGGACTGTCTCACAGTCTGTGAGGTGCAGCGAGGCAGAGCAGTGTCAGCAGACAATCTAATTGATTGTGTGAAGAAGAAGGACCATCAGAAGTTGAAGGAGCTGCACAAGAAGGGGGCAGACCTGTGTATGCAGGACCCTGTGGGCCGCACCCTTCTGCACTATGCTGTGGAAGTGGGCAGCAAGGAGATTGTCAGATACATCATTGATAATGGGAGCGGAGGACCTTGCCCAAAACCGGGAAGGTTCTACCCCATGCTCATCCTAAATGACCACTGGAAGCTACCAGCTAAGGCTAGCTACAACCATTGTAAAACCTGTAATATGAGACCACAGCAACAAACCGAACTCTCTCATAGGGAGTCGGTAATCCTACAATTAAGGATTCCACTTACACTCAACCATGAAAACATTGCCATCAAGGGGAGCCAGCTGAGTGCTAGCGGCGACCACTCAGAAACAAATGTCTTTGTAGGATCTCAAAACTCCAGACACTCCCGAAGGTGCCTTACAACAAAGAAGGGTTTGCAAACTGGGGCAAAAAAAACACTTCCTGATGGGCTCTTGAGATCGAAAGAGCTCATCCCAGGGTCTGAAGGACCCTGCTTCAAGACCCAACTCAGGGGGAGGGTTCTGCTCTTCAGTCAAACCCAAGGAAAAAGGGGCTCTCCAACACTCACGAAGTTTTGTACCTTTGCTCCACTGGGCCTTACTGGCGACACTCCAAAGCATCGTGCCGAGAAGGCGAAAGATGCAGAACTTGCGGCGTATCTTGAGAACCGCCAGCACTACCAAATGATCCAGCGTGAAGACCAGGAGACTGCAGTTTGACCTTTTGACCTCTCACCCTTCACCTCAACCAGTGTCCTGCTTTTTGTGCCAAAACAACAGTAACCAAAAATGTATCGCTGTACCCATAGCAGGCTGTCTGGACTGCACCGGGGGTGGATACATTCCCAGAGAGGGGGGACGGTCGCACACTTAACTGTCTCTGAAGAGGTCCCTAGCTTTTATCATCATTCTCTGAATGACCTGTTGGACTTAATGTCTTTTATTTCATTGCACTGCCAAAACATCTTAGAGTTTGTATGTATGAGACAGAATGCAGAATTCTCTTCATGTTAATACACTCATCACGTTTGCTTTTCTAGTTTGACAATGCTGAATGTTAGTTGAATACAGTGAGGATTTCAAAGATGCATGGGCTGGTGAGGACAGTGCTGTTTGTGTCTCCAGAGTCATCACTGTCTGTAAGTGCAGCTGGAGCATTCACCGTAGCCCTGACTCTACATCTACAGGTTCAGTATTGCTCTGTTATAGCTGAACTTTAGTCTGGTTAGTGTCCAGAGCATGAACCGGAACCCGAAACAACATTTTAATAGCTGAATTATTTCCTAATAACAGTAGAGCCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU151691 lncRNA upstream 124004 10907475 ~ 10907675 (+) True G133426
TU151685 lncRNA upstream 136520 10886053 ~ 10895159 (+) True G133420
TU151669 lncRNA upstream 246117 10784792 ~ 10785562 (+) True G133406
TU151646 lncRNA upstream 403603 10552960 ~ 10628076 (+) True G133383
TU151635 lncRNA upstream 516031 10515420 ~ 10515648 (+) True G133373
TU151707 lncRNA downstream 55086 11118711 ~ 11119022 (+) True G133442
TU151708 lncRNA downstream 56023 11119648 ~ 11119877 (+) True G133443
TU151709 lncRNA downstream 56884 11120509 ~ 11120750 (+) True G133444
TU151725 lncRNA downstream 80684 11144309 ~ 11153397 (+) True G133454
TU151771 lncRNA downstream 129736 11193361 ~ 11193825 (+) True G133491
CI01000026_11012960_11021926.mRNA mRNA upstream 9753 11011340 ~ 11021926 (+) True CI01000026_11012960_11021926
CI01000026_10955581_10955874.mRNA mRNA upstream 75766 10954814 ~ 10955913 (+) True CI01000026_10955581_10955874
CI01000026_10930798_10950198.mRNA mRNA upstream 81366 10930798 ~ 10950313 (+) True CI01000026_10930798_10950198
CI01000026_10917489_10918872.mRNA mRNA upstream 112483 10915851 ~ 10919196 (+) True CI01000026_10917489_10918872
CI01000026_10871203_10872334.mRNA mRNA upstream 159340 10871203 ~ 10872339 (+) True CI01000026_10871203_10872334
CI01000026_11075931_11078249.mRNA mRNA downstream 12159 11075784 ~ 11078456 (+) False CI01000026_11075931_11078249
CI01000026_11203781_11212074.mRNA mRNA downstream 140156 11203781 ~ 11212582 (+) True CI01000026_11203781_11212074
CI01000026_11239339_11240254.mRNA mRNA downstream 175714 11239339 ~ 11240433 (+) True CI01000026_11239339_11240254
CI01000026_11241496_11246081.mRNA mRNA downstream 177871 11241496 ~ 11246081 (+) False CI01000026_11241496_11246081
CI01000026_11262923_11264188.mRNA mRNA downstream 197456 11261081 ~ 11264534 (+) True CI01000026_11262923_11264188
TU151441 other upstream 869718 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 1462519 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2524892 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2732265 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2842606 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 7143 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 181308 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 412492 11476117 ~ 11476907 (+) False G133542

Expression Profile