RNA id: TU151635


Basic Information

Item Value
RNA id TU151635
length 229
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G133373
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 10515420 ~ 10515648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTCTTAAATGAGACTGCCTCGATGATGTATGAAGCCTTCAAAGGGTGCAGCCCCTGAATTAGGACAGCCATTGTTGAAAAATCTCTCGGCTTCCGTATCCCGAACGAAGCGCGTTGATGGGCGTGCTCTTGCTCTTGCTCTGGGTGATGTGTGTGTGCACGCTTACCAGGGAGAAGTGCCTATACAAGGAATTCCACCGTTTATTACGTGATAAAGGACCATACTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151606 lncRNA upstream 128176 10387042 ~ 10387244 (+) True G133344
TU151601 lncRNA upstream 133662 10381554 ~ 10381758 (+) True G133339
TU151600 lncRNA upstream 133871 10381254 ~ 10381549 (+) True G133338
TU151598 lncRNA upstream 141465 10373398 ~ 10373955 (+) True G133336
TU151513 lncRNA upstream 159943 10354819 ~ 10355477 (+) True CI01000026_10351923_10354175
TU151646 lncRNA downstream 37312 10552960 ~ 10628076 (+) True G133383
TU151669 lncRNA downstream 269144 10784792 ~ 10785562 (+) True G133406
TU151685 lncRNA downstream 370405 10886053 ~ 10895159 (+) True G133420
TU151691 lncRNA downstream 391827 10907475 ~ 10907675 (+) True G133426
TU151707 lncRNA downstream 603063 11118711 ~ 11119022 (+) True G133442
CI01000026_10468478_10482863.mRNA mRNA upstream 32465 10468478 ~ 10482955 (+) True CI01000026_10468478_10482863
CI01000026_10458602_10465979.mRNA mRNA upstream 48907 10458602 ~ 10466513 (+) True CI01000026_10458602_10465979
CI01000026_10455059_10456945.mRNA mRNA upstream 57857 10455059 ~ 10457563 (+) True CI01000026_10455059_10456945
CI01000026_10453245_10454111.mRNA mRNA upstream 61244 10453125 ~ 10454176 (+) True CI01000026_10453245_10454111
CI01000026_10351923_10354175.mRNA mRNA upstream 158725 10351403 ~ 10356695 (+) False CI01000026_10351923_10354175
CI01000026_10521984_10543018.mRNA mRNA downstream 6336 10521984 ~ 10543108 (+) True CI01000026_10521984_10543018
CI01000026_10547566_10588420.mRNA mRNA downstream 31623 10547271 ~ 10589071 (+) True CI01000026_10547566_10588420
CI01000026_10634025_10634327.mRNA mRNA downstream 117806 10633454 ~ 10635525 (+) True CI01000026_10634025_10634327
CI01000026_10640494_10646504.mRNA mRNA downstream 124846 10640494 ~ 10646840 (+) True CI01000026_10640494_10646504
CI01000026_10651216_10652913.mRNA mRNA downstream 133895 10649543 ~ 10653754 (+) True CI01000026_10651216_10652913
TU151441 other upstream 353459 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 946260 9568739 ~ 9569160 (+) False G132667
TU149067 other upstream 2008633 8501408 ~ 8506787 (+) True G131077
TU148972 other upstream 2216006 8298573 ~ 8299414 (+) False CI01000026_08297901_08307596
TU148937 other upstream 2326347 8188374 ~ 8189073 (+) True G130967
TU151694 other downstream 555120 11070768 ~ 11070876 (+) True G133429
TU151777 other downstream 729285 11244933 ~ 11255073 (+) True G133497
TU151829 other downstream 960469 11476117 ~ 11476907 (+) False G133542

Expression Profile