RNA id: TU154140


Basic Information

Item Value
RNA id TU154140
length 1304
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id G135575
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14187018 ~ 14188380 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATATAGATAACTCTTCTTTCATTGAGTTGTACTTTCAGGTTCTACTGTTATTATTACAGCTGAGTTTGTTCTGGAAAACCTTTCTGACAAATTCACACAGTAAGTGCTTGTTATGACAAACTGCAGAAACCTTCAGTCTTTCAGCCAATTAGAGAAGGGTAAAGCACTGAGAGAAACTCACTATAGCCTCATTCTTACACGTCGCTACATGCTAGAACAGCGGTTGAAGATGGAGGAAGTTTAAACTATTAAATGCTATATGCTCTGGGCCCACAAATGACTTCTGGTGACATATTGAATTTCATTTAGTGCTACGCTAGTATCAAATCAACTTTGGGAACTAGGAGGCAGACTCACAGTCACTTCTCTGAACTCACTGAATATCAATGATGGCCGCAGATTCTGTGCAGTAATGAAAGAACATGAGAAATAGTATTGGAGGAAGGGCACAAGGGAGTTTGAATTAACAGACTTATCAGCGATCGTCAAGAAATATGACTGGCCTAACTATTCTGTAAGCAGACGCTCTATAAATCAAATTTAAACTAGGGATGTGCAAAACTACTTATTTTCAAAATTGACTTGTTGGTGAGTTGCCTGAACGACTAGACTAATCAACTATATAATTAGGCTGGTTTCACATTCACCATTAGAGCACATTATTTTTGACATAAGATGCATTCAATACTGGCTATATGGAGCGTGGTGGATTGGAACAGAATGTGTTTTTAGATGTTGGATTTTTTAAATATACATGCTGTCCATATGTGTATGGCTGTTGTGGTGGTGCTTTAAAGGGGGGTGGATTTGAAGATCCCAACATGCTGTACAACATGACGTACATTCACATCACATTTTTAGCAATGCAGCAGTAGAGTTAAATTCACATCACATAACAGTTCTTCGCCATCATGAAGGTTTATTATTTGAATGTGTTTTAAAGCCTTGTCAGATAAATTTTTTATTTGCATACTGTTCTGACATAAGCTTTTCTGAGCATGTACACCAAAAGCGCATGCACACTAAAAGTCTGTCAAACTGCATGATTACCGAACTAAGTATCTTATTGCGCTTAAACTGTCAGATTCACACAGGATTTACATAAACACACTCATTTATATCTTAAGTGAATGTAAACAGTTCAGATGCGTGTCAGCAGTATATTAGATATGTGCAATAGATCTTAAAGTGACATCAGCCTAATATACCTGCTGCTGTCTGTGTCATTAATATTAATCAAACAACAAAATATATAGAGAAAATCACTCACTGCTCTTGACTGAATGTTTTATTTTTACATTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154107 lncRNA upstream 21177 14163249 ~ 14165841 (+) True G135542
TU154103 lncRNA upstream 29722 14155181 ~ 14157296 (+) True G135538
TU154129 lncRNA upstream 33492 14153259 ~ 14153526 (+) True G135564
TU154127 lncRNA upstream 38641 14148172 ~ 14148377 (+) True G135562
TU154021 lncRNA upstream 197260 13989481 ~ 13989758 (+) True G135462
TU154157 lncRNA downstream 34696 14223076 ~ 14223401 (+) True G135592
TU154158 lncRNA downstream 36320 14224700 ~ 14225556 (+) True G135593
TU154230 lncRNA downstream 58797 14247177 ~ 14247692 (+) True G135660
TU154342 lncRNA downstream 145548 14333928 ~ 14334578 (+) False G135770
TU154341 lncRNA downstream 145929 14334309 ~ 14334908 (+) False G135770
CI01000026_14178928_14180619.mRNA mRNA upstream 6286 14178250 ~ 14180732 (+) True CI01000026_14178928_14180619
CI01000026_14074647_14076746.mRNA mRNA upstream 109917 14074410 ~ 14077101 (+) True CI01000026_14074647_14076746
CI01000026_13837986_13903960.mRNA mRNA upstream 282756 13837739 ~ 13904262 (+) True CI01000026_13837986_13903960
CI01000026_13705684_13706187.mRNA mRNA upstream 480456 13704984 ~ 13706562 (+) True CI01000026_13705684_13706187
CI01000026_13356327_13411385.mRNA mRNA upstream 775284 13356327 ~ 13411734 (+) True CI01000026_13356327_13411385
CI01000026_14205243_14205597.mRNA mRNA downstream 14056 14202436 ~ 14206263 (+) True CI01000026_14205243_14205597
CI01000026_14282383_14282886.mRNA mRNA downstream 93765 14282145 ~ 14283069 (+) True CI01000026_14282383_14282886
CI01000026_14473444_14517944.mRNA mRNA downstream 283177 14471557 ~ 14518132 (+) False CI01000026_14473444_14517944
CI01000026_14530926_14542878.mRNA mRNA downstream 340524 14528904 ~ 14543624 (+) True CI01000026_14530926_14542878
CI01000026_14579105_14590405.mRNA mRNA downstream 390725 14579105 ~ 14591232 (+) True CI01000026_14579105_14590405
TU151829 other upstream 2710111 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 2931945 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 3107938 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 4025057 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 4617858 9568739 ~ 9569160 (+) False G132667

Expression Profile