RNA id: TU154158



Basic Information


Item Value
RNA id TU154158
length 857
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G135593
representative True

Chromosome Information


Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14224700 ~ 14225556 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGAGGAGTCGCCTGTCAATTGTGTCATATCCGCGTTAACCCTCGGTCTGCCTCGGTTTCCGGTTTTATTTTGTAGAAACCATGGAAACACCAAAGACGCTTTAATATATTACACATTTTAATAGACAAGGGAACAACTGTAAAACAGAAAACTAATTGTTGTTATATAGCTCAACACATTTAGTCTTATTGTTTAAATCTAATTTTCTTGATTTTTTGCGAGTACCATGCTTTACCATGCCTCAGAGAAAAACACTATTTTGTCAAGTAGCTAACATAGAATAATCAGATGCAGCTTTATTTTTAGTAACAGTAATACAGAATTTTCTCCATCATACAATACGTTTTAAAATTAATTGCATGCCATTTATCAACACAAGCCATCCAGCATTTAATATGATATTCTAAAATCGATCTAGCTTACTGCAGTGTGTCTCAAACAAGTTTTTCACAGCAGGCGCCGAGTGAACGCTTAGAGTAACGTTATAACATTTTCAACACACTCAAATGTATCTAATATGATAAACAGAGCTGCGTTACCTCATACTCATGACCGGAAAAGCGGAAGCAACGCCAGCGACTGTGGCATAATAAAAGTTCCGCTGCTCGTGAGGCTTGTGTTGTGCAATCGCTCCAGCGGCCTCGTTCAGCTCCAACAACACTCGGTCCTGCTCTGCTTCATACTACAGTAACGTTAATAATCGCATCCATGAACATGATTTCTTCCCGAGTCCTATCCCTCTTCTTCTGCACCGTCCGTTGAGGTGAAGACCACATGTCCCAAGATTCTGAGCTCAAACTTGGCGTCATCAAGCTACGCCTTTGTTTTGAATAGGCCTCTAGCGACCTCTAGCGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU154157 lncRNA upstream 1299 14223076 ~ 14223401 (+) True G135592
TU154140 lncRNA upstream 36320 14187018 ~ 14188380 (+) True G135575
TU154107 lncRNA upstream 58859 14163249 ~ 14165841 (+) True G135542
TU154103 lncRNA upstream 67404 14155181 ~ 14157296 (+) True G135538
TU154129 lncRNA upstream 71174 14153259 ~ 14153526 (+) True G135564
TU154230 lncRNA downstream 21621 14247177 ~ 14247692 (+) True G135660
TU154342 lncRNA downstream 108372 14333928 ~ 14334578 (+) False G135770
TU154341 lncRNA downstream 108753 14334309 ~ 14334908 (+) False G135770
TU154340 lncRNA downstream 109067 14334623 ~ 14334908 (+) True G135770
TU154388 lncRNA downstream 139967 14365523 ~ 14365743 (+) True G135815
CI01000026_14205243_14205597.mRNA mRNA upstream 18437 14202436 ~ 14206263 (+) True CI01000026_14205243_14205597
CI01000026_14178928_14180619.mRNA mRNA upstream 43968 14178250 ~ 14180732 (+) True CI01000026_14178928_14180619
CI01000026_14074647_14076746.mRNA mRNA upstream 147599 14074410 ~ 14077101 (+) True CI01000026_14074647_14076746
CI01000026_13837986_13903960.mRNA mRNA upstream 320438 13837739 ~ 13904262 (+) True CI01000026_13837986_13903960
CI01000026_13705684_13706187.mRNA mRNA upstream 518138 13704984 ~ 13706562 (+) True CI01000026_13705684_13706187
CI01000026_14282383_14282886.mRNA mRNA downstream 56589 14282145 ~ 14283069 (+) True CI01000026_14282383_14282886
CI01000026_14473444_14517944.mRNA mRNA downstream 246001 14471557 ~ 14518132 (+) False CI01000026_14473444_14517944
CI01000026_14530926_14542878.mRNA mRNA downstream 303348 14528904 ~ 14543624 (+) True CI01000026_14530926_14542878
CI01000026_14579105_14590405.mRNA mRNA downstream 353549 14579105 ~ 14591232 (+) True CI01000026_14579105_14590405
CI01000026_14607563_14660403.mRNA mRNA downstream 382007 14607563 ~ 14660403 (+) True CI01000026_14607563_14660403
TU151829 other upstream 2747793 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 2969627 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 3145620 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 4062739 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 4655540 9568739 ~ 9569160 (+) False G132667

Expression Profile