RNA id: TU154230


Basic Information

Item Value
RNA id TU154230
length 516
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G135660
representative True

Chromosome Information

Item Value
chromosome id CI01000026
NCBI id null
chromosome length 17172400
location 14247177 ~ 14247692 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAGAACTCAAAAACTGCATTAATACAGCTCACATGCTATGCTTGTTTGTTTGACTAAAAATGTGTGTATGTGATTTTTAAGCTGTTAAAACTCCAGAGAAAGTAGTAAAAAAAAAAACAAAAAAAAAACCACAATAATTAAAGAGTTAATTCACCGAAAAATGACATTAATAACTCACCTTCATGTCGTTCCGCACGTCCTGATATTGCTGAGTTAGATGCGTTCCTGGGTCAACATATTTTGTTGATCCTGGAACAACATTCTAGTCTGAACATTTAGTCTTAACCCTATTCCTACCCCTAAACCTAACCCTACCCATAAGTAATCCCAAAAATCAGAGGGAAATGATAGATGAATAACACTGATGTAGAAGCACCAATTCATGTTTTTAAGCCTAAACTTGACATAATCTGTAAACTTGTCCCTCAAATCTGATTGGTTGATTTGAATGTTGTTCCAGGATCAACAAAAATGTTGACCCAGGAACATGTTGAACTCAGCAATATCAGGTTATGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154158 lncRNA upstream 21621 14224700 ~ 14225556 (+) True G135593
TU154157 lncRNA upstream 23776 14223076 ~ 14223401 (+) True G135592
TU154140 lncRNA upstream 58797 14187018 ~ 14188380 (+) True G135575
TU154107 lncRNA upstream 81336 14163249 ~ 14165841 (+) True G135542
TU154103 lncRNA upstream 89881 14155181 ~ 14157296 (+) True G135538
TU154342 lncRNA downstream 86236 14333928 ~ 14334578 (+) False G135770
TU154341 lncRNA downstream 86617 14334309 ~ 14334908 (+) False G135770
TU154340 lncRNA downstream 86931 14334623 ~ 14334908 (+) True G135770
TU154388 lncRNA downstream 117831 14365523 ~ 14365743 (+) True G135815
TU154398 lncRNA downstream 148279 14395971 ~ 14396204 (+) True G135825
CI01000026_14205243_14205597.mRNA mRNA upstream 40914 14202436 ~ 14206263 (+) True CI01000026_14205243_14205597
CI01000026_14178928_14180619.mRNA mRNA upstream 66445 14178250 ~ 14180732 (+) True CI01000026_14178928_14180619
CI01000026_14074647_14076746.mRNA mRNA upstream 170076 14074410 ~ 14077101 (+) True CI01000026_14074647_14076746
CI01000026_13837986_13903960.mRNA mRNA upstream 342915 13837739 ~ 13904262 (+) True CI01000026_13837986_13903960
CI01000026_13705684_13706187.mRNA mRNA upstream 540615 13704984 ~ 13706562 (+) True CI01000026_13705684_13706187
CI01000026_14282383_14282886.mRNA mRNA downstream 34453 14282145 ~ 14283069 (+) True CI01000026_14282383_14282886
CI01000026_14473444_14517944.mRNA mRNA downstream 223865 14471557 ~ 14518132 (+) False CI01000026_14473444_14517944
CI01000026_14530926_14542878.mRNA mRNA downstream 281212 14528904 ~ 14543624 (+) True CI01000026_14530926_14542878
CI01000026_14579105_14590405.mRNA mRNA downstream 331413 14579105 ~ 14591232 (+) True CI01000026_14579105_14590405
CI01000026_14607563_14660403.mRNA mRNA downstream 359871 14607563 ~ 14660403 (+) True CI01000026_14607563_14660403
TU151829 other upstream 2770270 11476117 ~ 11476907 (+) False G133542
TU151777 other upstream 2992104 11244933 ~ 11255073 (+) True G133497
TU151694 other upstream 3168097 11070768 ~ 11070876 (+) True G133429
TU151441 other upstream 4085216 10159819 ~ 10161961 (+) True G133192
TU150881 other upstream 4678017 9568739 ~ 9569160 (+) False G132667

Expression Profile