RNA id: TU157737


Basic Information

Item Value
RNA id TU157737
length 293
lncRNA type intronic
GC content 0.25
exon number 1
gene id G138831
representative True

Chromosome Information

Item Value
chromosome id CI01000027
NCBI id null
chromosome length 10680226
location 3122874 ~ 3123166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATACAAAAGCACTTCAGGAGTGCGTGGGCGATATGACCAAATTCTTATTTCACCATATGAGAAATTTTATTTCATGATAACGACATATATCACGATATAGTTATTTTGTGTTATTTTATCTCATTTCTGTTATTAAAAATAAGAACAATAGGACAAATACAATTTAACAAAAATGTCAATTAAACAAATTAAGTTTCAGGTACAATAGGTTTATTTAACATGTAGTTAGAATTAGTACAAAAAACTATAATCAAATGTAAAAATAAAATTCACTGTATGACTCAAATATAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157736 lncRNA upstream 169 3122291 ~ 3122705 (+) True G138830
TU157734 lncRNA upstream 6215 3116370 ~ 3116659 (+) True G138828
TU157722 lncRNA upstream 133941 2988688 ~ 2988933 (+) True G138817
TU157707 lncRNA upstream 152066 2963817 ~ 2970808 (+) True G138802
TU157700 lncRNA upstream 174097 2947338 ~ 2948777 (+) True CI01000027_02941870_02946290
TU157738 lncRNA downstream 1631 3124797 ~ 3125029 (+) True G138832
TU157739 lncRNA downstream 2283 3125449 ~ 3125675 (+) True G138833
TU157740 lncRNA downstream 3877 3127043 ~ 3127275 (+) True G138834
TU157741 lncRNA downstream 4189 3127355 ~ 3127942 (+) True G138835
TU157742 lncRNA downstream 6293 3129459 ~ 3136867 (+) True G138836
CI01000027_03110196_03113083.mRNA mRNA upstream 9465 3109207 ~ 3113409 (+) True CI01000027_03110196_03113083
CI01000027_03014464_03027710.mRNA mRNA upstream 95012 3013856 ~ 3027862 (+) True CI01000027_03014464_03027710
CI01000027_03008262_03011156.mRNA mRNA upstream 110879 3008262 ~ 3011995 (+) True CI01000027_03008262_03011156
CI01000027_02995394_03005981.mRNA mRNA upstream 116877 2995394 ~ 3005997 (+) True CI01000027_02995394_03005981
CI01000027_02991231_02994560.mRNA mRNA upstream 128157 2991231 ~ 2994717 (+) True CI01000027_02991231_02994560
CI01000027_03142352_03156415.mRNA mRNA downstream 18944 3142110 ~ 3157077 (+) True CI01000027_03142352_03156415
CI01000027_03159177_03163102.mRNA mRNA downstream 35803 3158969 ~ 3163325 (+) True CI01000027_03159177_03163102
CI01000027_03174793_03181990.mRNA mRNA downstream 51627 3174793 ~ 3182308 (+) True CI01000027_03174793_03181990
CI01000027_03202787_03208051.mRNA mRNA downstream 79621 3202787 ~ 3208301 (+) True CI01000027_03202787_03208051
CI01000027_03212432_03231800.mRNA mRNA downstream 89266 3212432 ~ 3231862 (+) True CI01000027_03212432_03231800
TU157376 other upstream 1446014 1664408 ~ 1676860 (+) False G138515
TU157281 other upstream 1615058 1506961 ~ 1507816 (+) True G138436
TU157117 other upstream 2123693 995970 ~ 999181 (+) True G138290
TU157065 other upstream 2253299 855388 ~ 869575 (+) False G138247
TU157051 other upstream 2291191 829774 ~ 831683 (+) True G138238
TU157841 other downstream 361221 3484387 ~ 3486647 (+) True G138915
TU157886 other downstream 378906 3502072 ~ 3520065 (+) True G138953
TU159628 other downstream 1614232 4737398 ~ 4774262 (+) False G140436
TU159629 other downstream 1614232 4737398 ~ 4774262 (+) False G140436
TU159630 other downstream 1614232 4737398 ~ 4774262 (+) True G140436

Expression Profile