Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00015056 |
| length | 897 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 11 |
| gene id | XLOC_007678 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007125.7 |
| NCBI id | CM002898.2 |
| chromosome length | 52660232 |
| location | 5588029 ~ 5642461 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0030097 | hemopoiesis | biological_process |
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0006338 | chromatin remodeling | biological_process |
| GO:0000055 | ribosomal large subunit export from nucleus | biological_process |
| GO:0000056 | ribosomal small subunit export from nucleus | biological_process |
| GO:0006407 | rRNA export from nucleus | biological_process |
| GO:0042273 | ribosomal large subunit biogenesis | biological_process |
| GO:0042274 | ribosomal small subunit biogenesis | biological_process |
| GO:0010824 | regulation of centrosome duplication | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:1990904 | ribonucleoprotein complex | cellular_component |
| GO:0005813 | centrosome | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0042393 | histone binding | molecular_function |
| GO:0003676 | nucleic acid binding | molecular_function |
| GO:0003682 | chromatin binding | molecular_function |
| GO:0003723 | RNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-080723-7 | Predicted to enable RNA binding activity; chromatin binding activity; and histone binding activity. Acts upstream of or within hemopoiesis and regulation of apoptotic process. Predicted to be located in nucleus. Predicted to be part of ribonucleoprotein complex. Predicted to be active in centrosome; cytoplasm; and nuclear lumen. Is expressed in several structures, including eye; fin bud; hematopoietic cell; hematopoietic stem cell; and somite. Human ortholog(s) of this gene implicated in acute myeloid leukemia. Orthologous to human NPM1 (nucleophosmin 1). |
| ensembl_id | ENSDART00000183859 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00015054 | lncRNA | downstream | 27279 | 5560755 ~ 5563191 (-) | True | XLOC_007677 |
| TCONS_00016349 | lncRNA | downstream | 261294 | 5327056 ~ 5329176 (-) | True | XLOC_007674 |
| TCONS_00016348 | lncRNA | downstream | 477986 | 4984250 ~ 5112484 (-) | False | XLOC_007673 |
| TCONS_00016027 | lncRNA | downstream | 478061 | 5025982 ~ 5112409 (-) | True | XLOC_007673 |
| TCONS_00016347 | lncRNA | downstream | 478089 | 4984250 ~ 5112381 (-) | False | XLOC_007673 |
| TCONS_00015061 | lncRNA | upstream | 168032 | 5810403 ~ 5812940 (-) | True | XLOC_007680 |
| TCONS_00015065 | lncRNA | upstream | 513003 | 6155374 ~ 6158751 (-) | True | XLOC_007682 |
| TCONS_00016350 | lncRNA | upstream | 550878 | 6193249 ~ 6197678 (-) | False | XLOC_007684 |
| TCONS_00016351 | lncRNA | upstream | 550878 | 6193249 ~ 6202852 (-) | False | XLOC_007684 |
| TCONS_00016352 | lncRNA | upstream | 550878 | 6193249 ~ 6204004 (-) | False | XLOC_007684 |
| TCONS_00015053 | mRNA | downstream | 43973 | 5506983 ~ 5546497 (-) | True | XLOC_007676 |
| TCONS_00015051 | mRNA | downstream | 182915 | 5394630 ~ 5407555 (-) | False | XLOC_007675 |
| TCONS_00015052 | mRNA | downstream | 183352 | 5394671 ~ 5407118 (-) | True | XLOC_007675 |
| TCONS_00015046 | mRNA | downstream | 908356 | 4610439 ~ 4682114 (-) | True | XLOC_007668 |
| TCONS_00015045 | mRNA | downstream | 1033559 | 4486822 ~ 4556911 (-) | True | XLOC_007665 |
| TCONS_00015057 | mRNA | upstream | 14139 | 5656510 ~ 5677979 (-) | False | XLOC_007679 |
| TCONS_00015058 | mRNA | upstream | 14308 | 5656679 ~ 5690363 (-) | False | XLOC_007679 |
| TCONS_00015059 | mRNA | upstream | 14351 | 5656722 ~ 5678457 (-) | True | XLOC_007679 |
| TCONS_00015060 | mRNA | upstream | 162557 | 5804928 ~ 5817039 (-) | False | XLOC_007680 |
| TCONS_00015062 | mRNA | upstream | 224523 | 5866894 ~ 5912716 (-) | False | XLOC_007681 |
| TCONS_00015014 | other | downstream | 2518832 | 3066633 ~ 3071638 (-) | False | XLOC_007649 |
| TCONS_00015013 | other | downstream | 2518882 | 3066633 ~ 3071588 (-) | False | XLOC_007649 |
| TCONS_00014999 | other | downstream | 3182630 | 2407736 ~ 2407840 (-) | True | XLOC_007641 |
| TCONS_00014998 | other | downstream | 3183039 | 2407328 ~ 2407431 (-) | True | XLOC_007640 |
| TCONS_00014997 | other | downstream | 3183398 | 2406978 ~ 2407072 (-) | True | XLOC_007639 |
| TCONS_00015066 | other | upstream | 544343 | 6186714 ~ 6186833 (-) | True | XLOC_007683 |
| TCONS_00015075 | other | upstream | 615316 | 6257687 ~ 6263305 (-) | True | XLOC_007686 |
| TCONS_00015086 | other | upstream | 1330497 | 6972868 ~ 6979330 (-) | False | XLOC_007693 |
| TCONS_00015098 | other | upstream | 1719378 | 7361749 ~ 7361865 (-) | True | XLOC_007700 |
| TCONS_00015108 | other | upstream | 2741178 | 8383549 ~ 8383923 (-) | True | XLOC_007711 |
