RNA id: TU167377


Basic Information

Item Value
RNA id TU167377
length 203
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G147359
representative True

Chromosome Information

Item Value
chromosome id CI01000028
NCBI id null
chromosome length 9874160
location 4412148 ~ 4412350 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTAAATGAGCCTTGGCCCACAGGACACGACGGCGCTTCTGGACCATGTTCACATATGGCTTCCTTTTTGCATGATAGAGCTTTAGTTGGCATCTGCAGATGGCACAGCGGATTGTGTTTACTGACAGTGGTTTCTGGAAGTATTCCTAGGCCCATTTAGTAATGTCATTGACACAATCATGCCGATGAGTGATGCAGTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167374 lncRNA upstream 6453 4405371 ~ 4405695 (+) True G147356
TU167368 lncRNA upstream 20232 4391588 ~ 4391916 (+) True G147350
TU167361 lncRNA upstream 47554 4364212 ~ 4364594 (+) True G147343
TU167345 lncRNA upstream 94871 4316775 ~ 4317277 (+) True G147327
TU166926 lncRNA upstream 141408 4270476 ~ 4270740 (+) True G146931
TU167381 lncRNA downstream 25704 4438054 ~ 4438299 (+) True G147363
TU167382 lncRNA downstream 26412 4438762 ~ 4438984 (+) True G147364
TU167384 lncRNA downstream 27111 4439461 ~ 4439663 (+) True G147366
TU167385 lncRNA downstream 27489 4439839 ~ 4440046 (+) True G147367
TU167355 lncRNA downstream 35634 4447984 ~ 4450752 (+) True G147337
CI01000028_04240962_04247433.mRNA mRNA upstream 163726 4240122 ~ 4248422 (+) False CI01000028_04240962_04247433
CI01000028_04224432_04233899.mRNA mRNA upstream 177936 4224226 ~ 4234212 (+) False CI01000028_04224432_04233899
CI01000028_04216684_04219734.mRNA mRNA upstream 192371 4215386 ~ 4219777 (+) True CI01000028_04216684_04219734
CI01000028_04145294_04156879.mRNA mRNA upstream 253495 4144943 ~ 4158653 (+) True CI01000028_04145294_04156879
CI01000028_03946366_03958585.mRNA mRNA upstream 452325 3944521 ~ 3959823 (+) False CI01000028_03946366_03958585
CI01000028_04441930_04444388.mRNA mRNA downstream 29516 4441866 ~ 4444480 (+) True CI01000028_04441930_04444388
CI01000028_04729544_04888382.mRNA mRNA downstream 317194 4729544 ~ 4888382 (+) True CI01000028_04729544_04888382
CI01000028_05039088_05063207.mRNA mRNA downstream 626738 5039088 ~ 5063207 (+) True CI01000028_05039088_05063207
CI01000028_05114584_05116494.mRNA mRNA downstream 701168 5113518 ~ 5117062 (+) True CI01000028_05114584_05116494
CI01000028_05120588_05127452.mRNA mRNA downstream 707833 5120183 ~ 5129029 (+) True CI01000028_05120588_05127452
TU165711 other upstream 1387928 3023146 ~ 3024220 (+) False G145843
TU164196 other upstream 3890217 492158 ~ 521931 (+) True G144526
TU167491 other downstream 546353 4958703 ~ 4989838 (+) True G147462
TU167681 other downstream 803740 5216090 ~ 5216611 (+) True G147636
TU167757 other downstream 1028104 5440454 ~ 5453610 (+) True G147693
TU169380 other downstream 3057542 7469892 ~ 7470700 (+) True CI01000028_07470324_07471346
TU170431 other downstream 3889897 8429474 ~ 8432552 (+) True G150068

Expression Profile