RNA id: TU173949


Basic Information

Item Value
RNA id TU173949
length 228
lncRNA type intronic
GC content 0.38
exon number 1
gene id G153164
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 2447615 ~ 2447842 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAAGGGCATGCCAACATCAATACACACACACACACACCCATACACAGAAGTGTTTTCTTACAATCTTTGTCTTTCACACTTTTTTACACATTTAATTTGCATGCGATCAACAGGCTTGAATCTAAATTATTCGGCATGCGAAGCCACCTTTATGCCTGGTGATGCATTTACATGTGTGCAATTAGAATGATTAATTAATCAGCTTGTTTGTCTGCCGAGCGAATTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU173948 lncRNA downstream 25 2447130 ~ 2447590 (-) True G153163
TU173947 lncRNA downstream 1725 2445151 ~ 2445890 (-) True G153162
TU173946 lncRNA downstream 3533 2443663 ~ 2444082 (-) True G153161
TU173919 lncRNA downstream 220052 2225717 ~ 2227563 (-) True G153134
TU173518 lncRNA downstream 333306 2113424 ~ 2114309 (-) True G152762
TU173950 lncRNA upstream 695 2448537 ~ 2448867 (-) True G153165
TU173951 lncRNA upstream 3112 2450954 ~ 2451466 (-) True G153166
TU173907 lncRNA upstream 42398 2490240 ~ 2491346 (-) True G153124
TU173911 lncRNA upstream 93553 2546075 ~ 2576115 (-) True G153127
TU173902 lncRNA upstream 138548 2586390 ~ 2586619 (-) True G153121
CI01000029_02359382_02359992.mRNA mRNA downstream 87623 2359013 ~ 2359992 (-) True CI01000029_02359382_02359992
CI01000029_02254888_02257580.mRNA mRNA downstream 190035 2254877 ~ 2257580 (-) True CI01000029_02254888_02257580
CI01000029_02231187_02248416.mRNA mRNA downstream 198124 2231187 ~ 2249491 (-) True CI01000029_02231187_02248416
CI01000029_02203122_02221481.mRNA mRNA downstream 226134 2202780 ~ 2221481 (-) True CI01000029_02203122_02221481
CI01000029_02159023_02164894.mRNA mRNA downstream 282487 2158837 ~ 2165128 (-) True CI01000029_02159023_02164894
CI01000029_02502175_02516608.mRNA mRNA upstream 54314 2502156 ~ 2517380 (-) True CI01000029_02502175_02516608
CI01000029_02532272_02537205.mRNA mRNA upstream 84358 2532200 ~ 2537205 (-) True CI01000029_02532272_02537205
CI01000029_02539755_02540836.mRNA mRNA upstream 91887 2539729 ~ 2541405 (-) False CI01000029_02539755_02540836
CI01000029_02589994_02592379.mRNA mRNA upstream 140608 2588450 ~ 2592379 (-) False CI01000029_02589994_02592379
CI01000029_02593889_02603627.mRNA mRNA upstream 145549 2593391 ~ 2603627 (-) True CI01000029_02593889_02603627
TU173481 other downstream 1153492 1292249 ~ 1294123 (-) True CI01000029_01293143_01293964
TU173923 other upstream 144324 2592459 ~ 2592802 (-) True G153138
TU174756 other upstream 800935 3248777 ~ 3286554 (-) True G153891
TU174823 other upstream 1258381 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU175091 other upstream 2012501 4472400 ~ 4477212 (-) True G154201
TU175317 other upstream 2538266 4986108 ~ 4987425 (-) False G154415

Expression Profile