RNA id: TU177577


Basic Information

Item Value
RNA id TU177577
length 327
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G156401
representative True

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 6861431 ~ 6861757 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATCAATGTTGAAAACATCTTTGCTGAATAGAAAGTTCAAAAGAGCAGCATTTATCTGAAATAGAAATCTTTTATAACATAAATGTCTTTACTGTCACTTTTATCAATTTTTAAGGCACAATATGTAATTTTTTTGCCGCTAGAGGGCGCTTATTCAAAACAAAGGCGTAGCTTGATGACGCCTTGATTTTGAGGAATCATGGGAGTTGTTGTCTTCACGTCTACAGCTGGCGGAAAAGAATCCGACGGGACTCGGGCAGAAATCACATTCATGGATGAGCTAATGTATTAAAGATTTATTAACATTACTGTAGTATGAAGCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177576 lncRNA downstream 187 6860954 ~ 6861244 (-) True G156400
TU177569 lncRNA downstream 9107 6852124 ~ 6852324 (-) True G156396
TU177492 lncRNA downstream 27735 6786413 ~ 6833696 (-) False G156323
TU177586 lncRNA upstream 20830 6882587 ~ 6886699 (-) True G156410
TU177592 lncRNA upstream 31457 6893214 ~ 6902216 (-) True G156416
TU177641 lncRNA upstream 159329 7021086 ~ 7021734 (-) True G156459
TU177645 lncRNA upstream 166801 7028558 ~ 7028779 (-) True G156463
TU177651 lncRNA upstream 175424 7037181 ~ 7037486 (-) True G156469
CI01000029_06832914_06833074.mRNA mRNA downstream 28357 6832709 ~ 6833074 (-) False CI01000029_06832914_06833074
CI01000029_06798103_06806327.mRNA mRNA downstream 54585 6798040 ~ 6806846 (-) True CI01000029_06798103_06806327
CI01000029_06739098_06769987.mRNA mRNA downstream 91444 6738714 ~ 6769987 (-) False CI01000029_06739098_06769987
CI01000029_06719634_06722376.mRNA mRNA downstream 138259 6719527 ~ 6723172 (-) True CI01000029_06719634_06722376
CI01000029_06689615_06698873.mRNA mRNA downstream 162558 6689537 ~ 6698873 (-) True CI01000029_06689615_06698873
CI01000029_06921800_06922750.mRNA mRNA upstream 59524 6921281 ~ 6923115 (-) True CI01000029_06921800_06922750
CI01000029_07332828_07336542.mRNA mRNA upstream 470538 7332295 ~ 7336542 (-) True CI01000029_07332828_07336542
CI01000029_07346183_07362585.mRNA mRNA upstream 484308 7346065 ~ 7362585 (-) True CI01000029_07346183_07362585
CI01000029_07388885_07402311.mRNA mRNA upstream 526487 7388244 ~ 7402678 (-) True CI01000029_07388885_07402311
CI01000029_07405933_07416452.mRNA mRNA upstream 543786 7405543 ~ 7416952 (-) True CI01000029_07405933_07416452
TU175317 other downstream 1874006 4986108 ~ 4987425 (-) False G154415
TU175314 other downstream 1874006 4986185 ~ 4987425 (-) True G154415
TU175091 other downstream 2384219 4472400 ~ 4477212 (-) True G154201
TU174823 other downstream 3154179 3706223 ~ 3707252 (-) True CI01000029_03698769_03707177
TU174756 other downstream 3574877 3248777 ~ 3286554 (-) True G153891
TU177741 other upstream 308610 7170367 ~ 7170951 (-) False G156542
TU177684 other upstream 504570 7366327 ~ 7369547 (-) False G156495
TU177685 other upstream 504570 7366327 ~ 7369547 (-) False G156495

Expression Profile