RNA id: TU177125


Basic Information

Item Value
RNA id TU177125
length 532
RNA type TUCP
GC content 0.51
exon number 4
gene id G156007
representative False

Chromosome Information

Item Value
chromosome id CI01000029
NCBI id null
chromosome length 9486966
location 8964818 ~ 9064541 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAGTGCGTTTTTGCTTAAAACGAACAAAAATCTGTCAATCTTGTTTTCACTCTGAATTAAGTTTATTTCTCTGACCTCCCCGGCAGATTTTTTTTTTTTTTTTTTTTTTATTTCAGCTCAAGAAGCTTTATTATGGAAGCAGTTTCTCAGAGATGAGCGTAACGAATCATTTAGGAGTTGGCGTTGGGACCCTTCTTCTTGCCGAAGGTGGGAACCACGTTGACGAAGCGACGGTTGTACTGGATGCGGCGCTTGGCGCGGCCCGTCTTCTTCTTCTTCTTCTCCTGTTTGTCCACTTGGGTGTCTGTCCTCTTACTTTACCGGCACGAGCCAGAGATCCGTGGACTTTACCTCCCAGGAGTCTGGCGGCGAGCTCCAGCGTGCAGAGCTCCGTGACGCCGCAGGTCAGCAGGGTGGCGTCATCCTCCAGAGGAGCTCCAGCCAGCAGGAGAACCTGGTCCTCCACAGACACTCCCTCCAGAGTCTGAACATGAGCCTACAGAGACACATCATGAGACCAGAGCGCTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU177097 lncRNA upstream 84027 8880448 ~ 8880791 (+) True G155980
TU177080 lncRNA upstream 114226 8850127 ~ 8850592 (+) True G155965
TU177065 lncRNA upstream 126926 8823968 ~ 8837892 (+) False G155953
TU177073 lncRNA upstream 130189 8833535 ~ 8834629 (+) True G155959
TU177066 lncRNA upstream 138162 8823968 ~ 8826656 (+) True G155953
TU177153 lncRNA downstream 31390 9095931 ~ 9096174 (+) False CI01000029_09091229_09095666
TU177138 lncRNA downstream 31837 9096378 ~ 9101802 (+) True CI01000029_09091229_09095666
TU177211 lncRNA downstream 52091 9116632 ~ 9116923 (+) True G156087
TU177166 lncRNA downstream 53175 9117716 ~ 9118633 (+) True G156043
TU177217 lncRNA downstream 59934 9124475 ~ 9125086 (+) True G156091
CI01000029_08915550_08920146.mRNA mRNA upstream 44460 8914423 ~ 8920358 (+) True CI01000029_08915550_08920146
CI01000029_08759743_08761002.mRNA mRNA upstream 203624 8759743 ~ 8761194 (+) False CI01000029_08759743_08761002
CI01000029_08743604_08749941.mRNA mRNA upstream 214481 8740734 ~ 8750337 (+) True CI01000029_08743604_08749941
CI01000029_08654610_08655443.mRNA mRNA upstream 308268 8652582 ~ 8656550 (+) True CI01000029_08654610_08655443
CI01000029_08578097_08583564.mRNA mRNA upstream 380845 8577815 ~ 8583973 (+) True CI01000029_08578097_08583564
CI01000029_09079841_09080368.mRNA mRNA downstream 14452 9078993 ~ 9080635 (+) True CI01000029_09079841_09080368
CI01000029_09091229_09095666.mRNA mRNA downstream 26562 9091103 ~ 9097013 (+) False CI01000029_09091229_09095666
CI01000029_09132920_09139682.mRNA mRNA downstream 68029 9132570 ~ 9140319 (+) True CI01000029_09132920_09139682
CI01000029_09142383_09143514.mRNA mRNA downstream 77790 9142331 ~ 9143528 (+) True CI01000029_09142383_09143514
CI01000029_09146276_09147817.mRNA mRNA downstream 81683 9146224 ~ 9147831 (+) True CI01000029_09146276_09147817
TU176707 other upstream 1032641 7931480 ~ 7932177 (+) True G155627
TU176602 other upstream 1326984 7634833 ~ 7637834 (+) True G155522
TU176307 other upstream 2057386 6906188 ~ 6907432 (+) False CI01000029_06906861_06907157
TU176095 other upstream 2474524 6431535 ~ 6490294 (+) False G155083
TU176099 other upstream 2474524 6431535 ~ 6490294 (+) True G155083

Expression Profile