RNA id: CI01000037_02755842_02769590.mRNA


Basic Information

Item Value
RNA id CI01000037_02755842_02769590.mRNA
length 2745
RNA type mRNA
GC content 0.44
exon number 4
gene id CI01000037_02755842_02769590
representative True

Chromosome Information

Item Value
chromosome id CI01000037
NCBI id null
chromosome length 4612320
location 2755842 ~ 2771166 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAATGGATTCACTGCGCATACTGCTATACTCTCTCATATTCCTGCTGAGCGTGTTTGGTAATCTGCTCATCATTGTGGTTTTGGTGGTAAATAAGCGAATGCGGACGGTGACCAACTCATTCCTGCTCTCCCTGGCCATTAGTGATCTTATGATGGCTGTTGTCTGCATGCCCTTCACTCTTATTCCCAACCTGCTGGAGGATTTCATCTTTGGAGCTGCCATGTGCAAGATTGTGGCCTATCTTATGGGAATTTCTGTGTGCATATCTACCTTCAGTCTTGTGGCTATAGCCATTGAGAGGTACAGTGCCATTTGCAACCCGCTGAAGTCACGGGCATGGCAGACCCGATCCCACGCCTACAAAGTCATTGCTTCCACCTGGGTCCTGTCCTTCCTTATTATGACACCTTATCCCATCTTCAGCACCCTGGTGCAGTTCACCAAATCCAACAACATCACAGCTCACATGTGCCGCCATGACTGGCCAAAGAGCGAGGTGGAGCAAGCGTGGTGCATCCTGTTGCTATTTGTTCTGTTCTTCATTCCTGGAGTAGTGATGATCATCGCTTACGGGCTCATATCTCGAGAGCTCTACCGTGGAATACAGTTCGAATTGGAACAGAAGAAGGGACAATGCGGAATGAAAAATGGTATCAGCGGCACTGTCTTATGTAGCACCGATGACGGAGATGGCTGCTACATCCAGGTGTCCAAGAGGCCCAACTCCATGGAGATGTCAGCCCTCACCCCAACTGGCTCCGCAAAGGTGGACCGACCCCGCAGCAACACCTCCGAGGCTAAACTGATGGCAAAGAAGCGCGTGATCCGTATGCTCATTGTCATCGTGGCCATGTTCTTCATCTGCTGGATGCCCCTGTACTCCGTTAACACCTGGAAAGCATTCGACCTTCGCTCGGCCCACGAGGCTCTCTCTGGAGCCCCCATCTCTTTCATCCACCTGCTGTCCTACACATCTGCCTGCGTCAACCCCATCATCTACTGCTTTATGAACAAGCGTTTTCGAAAGGCGCTTCTCACCACTTTCTCTTGCTGCTGCTGGCCCTGCCGTAGAAGAGGCTTCAGGGAAGGTGATGATGAGGTCACTGCCACCGGAGCGTCCATGTCTAAATTCAACTACACCACTGTCAGCACAATGGGACCATGCTGATTCTCAGAGACCAAGGCTGGGAAAGATGGAGGAGAATTGGGGTTGATGTTGACATATTGTCAAGGTTCACACTATGGTAGAACGGAGTAGCTGTATTCAACTGAACACCCTTAGATTGTTCATCACCTACTCGCAACCAAGCAAACCACATGCTACATCATCATCGGTCATTGTTTTATGATCCATGATTGCTCATGGTGTTACATATTCACTATAGACTTGTATAAATGTATATACTTAAGGTGGCGTCCCACAAGCTGACCTAAAACAACTCGGTAGGAGAGGTTACACCAACCTCATCCTCTTCTGTTGAAGGTCCATTACTCTCACTCATTAAGAATGCAAATGAAAGACTAAATGACTAAACATTTCTTTCTGACTGAATTAGGATGTCATTTTGGTGTAGCAGAACCCAAGAAAAACATTTATTTATACAATCACTATAAATCAGTGTTTGATGCATGTGGCTTAGAGTTTGCTGAGGAGATGTTTGGATCAGATGCAAGCCTGGCAGCGGTTCTTCAGGATGAGAAGAAGCCTATTGGTTGGCCTTATCGTGATAATGATAATGTCAAAAATGCTATTGTTAGAGTCAACTATACCATGATCTCAGCAGGAAGCAGAGTTTCTGGAGCTGTTAGCGTTTACTGAGAGACGGCTACATGCACTGATGTCCTTTGATTCTCATACAACTATGTAAATGACTGAAAATAGCTAGTGGAATGCCAGCCTTAAACATTTTATGTTAAGTTATCCTTTTGTTGTTGTTTTAAGTGCCTGCAATCCGTTCAGAAGTCAAGGTTTTCTTCGGAGTAGTTGTTGCATAATGTAAAAGATTTCACTTATGAGAAATGATCAGAACTCTTGAACACTGACATGTTGCAACGCCTCTCCAAAGTCTGAGCCAACAGGCTTGCAGTATAAGTCACAATTCTACTGTATTACAAATACCTAATGCGCTGGTTAATGATGATAGTCTGTTGCTAGACAAGACAATGCTTTTGGCAATTGGTTTCATCCCATTTTTTGGAGCCAAAGAGGTTTTGTTTTTGAAGATGTCCTTCATGGCCCTCACAATCTGTGACTTGAGTGGCGGTAAATGCAGGTCACCTCAACTGAATGAGTACTCATGCCGAGCTGTCATAATCTCACAGACTGATTTATGGCTGCTTTTACATGTCCTCATAAATTTTATAGACATAAACTTATTAAGGTCCTCTCAGATGGTCCTCATCAAATAAGATCATTCAAACCTGATTTGCGATTGTTCCATTTCTCCTTCTTTAAAAGAGAAAAAAAAAAGAACATGTTTTTGAAGCAGTTTAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATGCTTGATTAAATGTCAGATATTTTTGACTGCCATGGGACTCATGGGAGGTGAGACTTGAGTCAGTCACTGTAAAAATTGTCAAGCCACTAAAATTGAAAACATCAATTTGATTGCTGACTTTAAGCAAAATTAAAGTGCTGCCAAAGTGACAACCTGTAGTGATAAGTTCATTGCACTTTCTCAGCCACTTTGATTTTAATTACTGATGAAA

Function

GO: NA

KEGG:

id description
K04194 CCKAR; cholecystokinin A receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199740 lncRNA upstream 34872 2715672 ~ 2720970 (+) True G175849
TU199741 lncRNA upstream 40331 2669506 ~ 2715511 (+) True G175850
TU199786 lncRNA upstream 64753 2690351 ~ 2691089 (+) True G175887
TU199772 lncRNA upstream 109674 2645839 ~ 2646168 (+) True G175877
TU199770 lncRNA upstream 119533 2636095 ~ 2636309 (+) True G175875
TU200241 lncRNA downstream 15695 2786861 ~ 2787562 (+) True G176273
TU200262 lncRNA downstream 26235 2797401 ~ 2798084 (+) True G176292
TU200265 lncRNA downstream 27046 2798212 ~ 2798493 (+) True G176294
TU200268 lncRNA downstream 28143 2799309 ~ 2799606 (+) True G176297
TU200274 lncRNA downstream 34157 2805323 ~ 2805550 (+) True G176303
CI01000037_02700254_02707760.mRNA mRNA upstream 47368 2699595 ~ 2708474 (+) True CI01000037_02700254_02707760
CI01000037_02527352_02576225.mRNA mRNA upstream 179138 2526102 ~ 2576704 (+) True CI01000037_02527352_02576225
CI01000037_02414352_02418569.mRNA mRNA upstream 337090 2414352 ~ 2418752 (+) True CI01000037_02414352_02418569
CI01000037_02405252_02406221.mRNA mRNA upstream 349405 2404783 ~ 2406437 (+) True CI01000037_02405252_02406221
CI01000037_02378066_02392175.mRNA mRNA upstream 362971 2378066 ~ 2392871 (+) True CI01000037_02378066_02392175
CI01000037_02907711_02908412.mRNA mRNA downstream 135897 2907063 ~ 2908634 (+) True CI01000037_02907711_02908412
CI01000037_02909777_02910445.mRNA mRNA downstream 138434 2909600 ~ 2910489 (+) True CI01000037_02909777_02910445
CI01000037_02965392_02966406.mRNA mRNA downstream 194226 2965392 ~ 2966433 (+) True CI01000037_02965392_02966406
CI01000037_03102630_03108094.mRNA mRNA downstream 331464 3102630 ~ 3109016 (+) True CI01000037_03102630_03108094
CI01000037_03120937_03121997.mRNA mRNA downstream 349771 3120937 ~ 3122022 (+) True CI01000037_03120937_03121997
TU199493 other upstream 785451 1970185 ~ 1970391 (+) True G175626
TU198758 other upstream 1078435 1677210 ~ 1677407 (+) True CI01000037_01674415_01677266
TU198741 other upstream 1141568 1613876 ~ 1614274 (+) False G174949
TU198740 other upstream 1141568 1613890 ~ 1614274 (+) False G174949
TU198421 other upstream 1766083 989270 ~ 989759 (+) True G174689
TU200317 other downstream 68594 2839760 ~ 2840053 (+) True G176346
TU200353 other downstream 205696 2976862 ~ 3087968 (+) True G176377
TU200774 other downstream 1442117 4213283 ~ 4218147 (+) True CI01000037_04213179_04218057

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073861 True 1182 mRNA 0.51 5 NC_007120.7 5776359 ~ 5805229 (-)
bowfin (Amia calva) AMCG00014350 True 7597 mRNA 0.37 5 CM030128.1 10352845 ~ 10380421 (+)