RNA id: TU204648


Basic Information

Item Value
RNA id TU204648
length 347
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G180224
representative True

Chromosome Information

Item Value
chromosome id CI01000039
NCBI id null
chromosome length 8355537
location 4420600 ~ 4420946 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTACAAACCGTTCTCCGCCCGGAATTAGCCAACCGTGCCGACCCGTTCTGCTAGAATGCGAGTAGTGACGTCGTCACTCAGGATCGGCCTGGCTGCCGGTTTCTCCGTAGCTTGCTAAACATGATATTTGAGCAACATTAACACAAATTAATCATACAATTAAAAGAAATAACTGATCATCCTACATAACGCGGCCACTATTTACACCGCATATCGTGTGTAAACTCTTGCGTTACTAAGGCAATGACTGAAGAGCTCCGTTATCAGCCCCACAGTGGAAAACGAAACCATATCCGTACCGGCCGGCTCGGATCAGATCGGCACGGAATGGAACAGTAAAGCAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU204647 lncRNA upstream 1949 4418248 ~ 4418651 (+) True G180223
TU204630 lncRNA upstream 10844 4409522 ~ 4409756 (+) True G180212
TU204628 lncRNA upstream 13320 4407023 ~ 4407280 (+) True G180210
TU204583 lncRNA upstream 168338 4249474 ~ 4252262 (+) True G180166
TU204613 lncRNA upstream 176097 4244239 ~ 4244503 (+) True G180196
TU204635 lncRNA downstream 172887 4593833 ~ 4595443 (+) False G180214
TU204637 lncRNA downstream 172887 4593833 ~ 4595443 (+) False G180214
TU204632 lncRNA downstream 173615 4594561 ~ 4595443 (+) True G180214
TU204681 lncRNA downstream 208030 4628976 ~ 4629213 (+) True G180257
TU204679 lncRNA downstream 208331 4629277 ~ 4629931 (+) True G180255
CI01000039_04384983_04394003.mRNA mRNA upstream 26476 4384820 ~ 4394124 (+) True CI01000039_04384983_04394003
CI01000039_04370566_04373090.mRNA mRNA upstream 47138 4369627 ~ 4373462 (+) True CI01000039_04370566_04373090
CI01000039_04364813_04366029.mRNA mRNA upstream 54369 4364169 ~ 4366231 (+) True CI01000039_04364813_04366029
CI01000039_04295776_04307914.mRNA mRNA upstream 112686 4295776 ~ 4307914 (+) True CI01000039_04295776_04307914
CI01000039_04244908_04247540.mRNA mRNA upstream 173060 4244504 ~ 4247540 (+) True CI01000039_04244908_04247540
CI01000039_04422021_04434173.mRNA mRNA downstream 913 4421859 ~ 4434227 (+) True CI01000039_04422021_04434173
CI01000039_04446796_04449452.mRNA mRNA downstream 25611 4446557 ~ 4449457 (+) True CI01000039_04446796_04449452
CI01000039_04454768_04457234.mRNA mRNA downstream 33297 4454243 ~ 4457270 (+) True CI01000039_04454768_04457234
CI01000039_04468348_04468960.mRNA mRNA downstream 47402 4468348 ~ 4469236 (+) True CI01000039_04468348_04468960
CI01000039_04470958_04472248.mRNA mRNA downstream 49964 4470910 ~ 4472649 (+) True CI01000039_04470958_04472248
TU204575 other upstream 195943 4223579 ~ 4223779 (+) True G180162
TU204574 other upstream 195943 4223593 ~ 4223779 (+) True G180162
TU204573 other upstream 195993 4223579 ~ 4223779 (+) False G180162
TU204572 other upstream 195993 4223593 ~ 4223779 (+) False G180162
TU204561 other upstream 328992 4090998 ~ 4091608 (+) False G180156
TU205651 other downstream 423236 4844182 ~ 4848563 (+) True CI01000039_04829464_04847182
TU206652 other downstream 2899738 7320684 ~ 7323274 (+) True G181961
TU206748 other downstream 3474930 7895876 ~ 7895913 (+) True G182040

Expression Profile