RNA id: CI01000040_01876498_01878546.mRNA


Basic Information

Item Value
RNA id CI01000040_01876498_01878546.mRNA
length 1226
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000040_01876498_01878546
representative True

Chromosome Information

Item Value
chromosome id CI01000040
NCBI id null
chromosome length 6879596
location 1876498 ~ 1879308 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACTGAAACCTTTGACGTCTTGGAGCTGGCAGAGCACGTGAAGAATCAAAGGTGGTGGAACAAAATGTTTGGCAAAAATCAATCTGGACCAGCTGCTGAGAAGTACTCCGTTGCAACACAGCTGGCCATTGGAGGAGTGACTGGCTGGTGTGCAGGGTACTTGTTTCAGAAAGTTGGAAAGCTTGCAGCATCAGCTGTAGGTGGTGGCTTCTTTTTGCTCCAGGACTGTTTACGCAATCTTCAATTGTACTTTCAGATTGCTCATCACACAGGCTATATTAAAGTGGACTGGAAAAGAGTTGAGCAAGATGTGAATAAGGCCAAGAAGCAACTGAAGCTGAATTCAGACAAGCCCACTGCAGAAGTGAGAACAAAATTTAATGAGGTGCAGGTATTTGTCAAGAAAAACATTGTTCTCACAGGGGGCTTTGCTGGAGGATTTCTGCTTGGTCTGGCTTCATAGAAGCTCTCTCATTGTTGTCTTCTACTCTGAGGATGTCATCTTACTATGTATACAGCAGATTGCAGCTTTTGTCTGATATTGCAGCTTGTATTTAACTCGGCAATCCTTCATTAGGTTTGACCTCTAATTAATAGGTTTAGCATGTTATGATGTGTTCATAAGTAAATATCTAAACTTGCTAGAAGGTATGGTCCCAGCTTTTGGATGTGTAATGTTTTTTAGTTTGTATTTACCACTGTTACATTTGTTTATTTGATCATTTTGCTCTATTATTTTGGTACAATCAATGTCTGACAAATAACTTAGTTTATTTAAACATGTAAATAGTTGCAACATTTGAAATTGCCCCTGTTAAAACACATATCTAAACTTGAAGAAATATGGTTACTAAGCTAACTGCATTTAACTGTTCAACCTCAAGCTTTTTTTTTTTTAATAATAAATCAGGGCATTATTTAAAAGATCAAGGTCAATCAAAATTGAAATTTTAACTGATAATGACAGAAATGTTAAAAGTAAATTGACAATCAGGTGTTAAACAATGCTGGTTTGCCTTTTTTGTCTGTTCTTTGTTTTGTTGCTGATATTTTTGAAATACATCTCCTCTGTTTTGGTAAATTACAGATAATGTTAGCACATCATGATGTCCTATTCCAGTCTCTTTTTGATTTTGTGATTGAGTTTCATGTAATTACAGAAATCCCAGCTTCAAACTTTAGGAAATTGGTCAAAATTGACCAAATGGTGTTCAATGTCACTTAA

Function

GO:

id name namespace
GO:0031307 integral component of mitochondrial outer membrane cellular_component

KEGG:

id description
K17986 FUNDC1; FUN14 domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU209263 lncRNA upstream 6156 1870133 ~ 1870342 (+) True G184268
TU209225 lncRNA upstream 177862 1698123 ~ 1698636 (+) True G184236
TU209224 lncRNA upstream 180544 1695593 ~ 1695954 (+) True G184235
TU209223 lncRNA upstream 182298 1693802 ~ 1694200 (+) True G184234
TU209220 lncRNA upstream 184739 1691422 ~ 1691759 (+) True G184231
TU209271 lncRNA downstream 17924 1897232 ~ 1897596 (+) True G184276
TU209290 lncRNA downstream 67181 1946489 ~ 1946692 (+) True G184295
TU209295 lncRNA downstream 77221 1956529 ~ 1956873 (+) True G184297
TU209322 lncRNA downstream 148773 2028081 ~ 2112062 (+) True G184324
TU209351 lncRNA downstream 235432 2114740 ~ 2174379 (+) True G184351
CI01000040_01760148_01802721.mRNA mRNA upstream 73496 1760148 ~ 1803002 (+) True CI01000040_01760148_01802721
CI01000040_01728828_01731709.mRNA mRNA upstream 144266 1727772 ~ 1732232 (+) True CI01000040_01728828_01731709
CI01000040_01707444_01725985.mRNA mRNA upstream 150513 1707281 ~ 1725985 (+) True CI01000040_01707444_01725985
CI01000040_01706518_01706939.mRNA mRNA upstream 169264 1706518 ~ 1707234 (+) True CI01000040_01706518_01706939
CI01000040_01604128_01609619.mRNA mRNA upstream 266784 1604128 ~ 1609714 (+) True CI01000040_01604128_01609619
CI01000040_01882704_01887004.mRNA mRNA downstream 2485 1881793 ~ 1887135 (+) True CI01000040_01882704_01887004
CI01000040_02315449_02344137.mRNA mRNA downstream 436141 2315449 ~ 2344313 (+) True CI01000040_02315449_02344137
CI01000040_02444252_02460962.mRNA mRNA downstream 564253 2443561 ~ 2460962 (+) True CI01000040_02444252_02460962
CI01000040_02475489_02482435.mRNA mRNA downstream 596181 2475489 ~ 2482515 (+) True CI01000040_02475489_02482435
CI01000040_02558495_02563310.mRNA mRNA downstream 679075 2558383 ~ 2563546 (+) True CI01000040_02558495_02563310
TU208940 other upstream 640009 1230292 ~ 1236489 (+) True G184003
TU208979 other upstream 898335 974113 ~ 974246 (+) True G184034
TU208290 other upstream 1599643 197712 ~ 276855 (+) True G183418
TU208294 other upstream 1711576 157543 ~ 164922 (+) True G183420
TU208230 other upstream 1816101 53691 ~ 60397 (+) True G183366
TU210451 other downstream 1454270 3333578 ~ 3333983 (+) True G185296
TU211111 other downstream 1859679 3738987 ~ 3739281 (+) True G185884
TU211185 other downstream 2094457 3973765 ~ 3974123 (+) True G185947
TU212953 other downstream 4089737 5969045 ~ 5971732 (+) False G187510
TU212954 other downstream 4089737 5969045 ~ 5971732 (+) False G187510

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU164750 False 1517 TUCP 0.43 7 NC_053123.1 6670240 ~ 6681971 (-)
bowfin (Amia calva) TU164750 True 602 TUCP 0.55 2 CM030138.1 414517 ~ 415154 (-)
mexican tetra (Astyanax mexicanus) TU164750 True 662 lncRNA 0.45 5 NC_035910.1 15076533 ~ 15082149 (-)