RNA id: TCONS_00015610


Basic Information

Item Value
RNA id TCONS_00015610
length 3854
RNA type mRNA
GC content 0.38
exon number 16
gene id XLOC_007986
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33219370 ~ 33265068 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TATGTTCCTGCACTCAGGGAACGTGGAGCCTCATTCATTGTTACCGCCTCATTAATATTCTCTCAGCGGGGAGTTGGAGTGCAGAGACCGTTCAAATGTGCTGAAGTTTGAGAGGCTGAATGGGATTTCGCTGTCACATCGTTTTTAGCAGTGAAAACAAATCCTCCCTCGAATCTACAATAAATCAAGACTCCCAAGCATGGCAAGAGCAAAGACATTTCAGGTGTGAAGAAGTGAGTCATTCCATATCCAAGCACCTGCACTAGAATACATGAGGAGTAACCTCCCTACATCCCGGACGTGACCCCCATTCATCTACGTACTTTCAGCTGGAATCATTTGATGTGGGAAAAACACAATGATCACTATGTTTCGAACCTGCCTGAGAGGGATCTACAGTTGCCACTGGAACCAGAGAAGTAATGAACAAAAAaGTGATCGCTGCTGGCTCTCATTTCTGTCTTTTGTGTCCATACTTGCCCTGAGCTGGATGTACATCTGTTTTATCGCCTTCAACGACCACTACGATGTAAACAATGAACTCTTCAAAGCAGTGAAAAAATGGGTGAACTGGTACATGATAGTGATGATCATTTCAGCTGTGCTTGCCATATACTGCTTGCTTTTACTGGTATTTGGATTGCTACATCTAGCCATCAAAGAACCATTGAATTTACACTGTCTGCATAAGGTGTTTCTGTTTTTGGGTCTCCTCGCTGTTACGTTGGAAACAGCTGGATTTTGTTTCAAATGGGAGAAGCAGTGGAAAGCCATCTACATGTCCTTTCAGGCTACTGCTCCTTTCCTGCAGCTGAGTGCTGTGGTGGCATTAACTGTGATCAGCTGCCTCGTCTTCCAGAGCTATCATAGAGCTAAAACAACTGCTTGTAAGATTTTCATAATGATGACCTTCCTGGTTGTGTCCGCTGCTGTGTTCCTGTGTCCTCTTGCAATCTGCTCTCCATGCATTACCAGTAATCTGCCCCCAAAACCTGCCCTCATTGGACATCGCGGTGCTCCCATGCTGGCTCCAGAGAACACTTTGATGTCCTTCAGGAAGAGTCTTGAGTTTGGTGTGGTGGCATTTGAAACAGATGTGCAACTTAGTAAGGACAAGAAGCCATTTTTAATGCATGACTGTGGTAAGAATTTTCTGCTGCGAACAACTGATGTAAAGGATAAGTTTCCAGGTCGAGATGGAAGCAACAACTTCACATTGCAAGAGTTAAAAACGTTAAATGCAGGCAAATGGTTTTCAAGGTCGGATCCATTTTGGACTCTGTCATCACTTTCAGAGGAAGAGAGGAGGGAAGCTGACAACCAGACAGTGCCATCTCTTTCTGAGCTCTTAGACCTGGTCAAAAAACATAATGTATCCCTCATATTTGACctgaaaaatgaaaacaactCAACGGTATTTCAAAGCAGTGACTCCTTCTACACCACTGAAACGATCAATAAATTAGGCATCTCACCTGACAAGATATGGTGGCTTCCCCCAGAATATAGACACGACGTGATGAAGATGGAACCAGGCTTCAAGCAGGTGTATAATAAGCAAAAGGAAATGCTTATGGACGGTGGAAACTTCATGAATATGAACTTCAGTTCACTTAGTGCGCTTGAAATAAGTGAGCTGCGGAAAAGCAATGTGTCTGTGAATCTCTGGGTTGTGAATGAGCGCTGGCTGTTTTCATTACTCTGGTGCTCTGGGGTCAGTTCAGTGACCACCAATGCCTGCCACCTCTTCAAAGACATGTCTAAGCCTGACTGGCATCTGGAACCTAATATGTACAAAGGAATATGGATCGCGACTGACATAGTATCATTGCTGTTAATGATTGGGCTGTTCCTTTGGCAAAGGAGAAGAAAGAGCTACATTTATCCTCCAAACACAAGTGAGAAAGGCATCCCGCTGCTTGCTCTCTGAGTGATGTCATCCTTTCCAGGAATGGGCATTTCCTTGTTTCAGTATTTGGATGATTGTGTGGTCAGAAAAACACACCACATTAAATGTGACATAATTTGCTTGTGCAGAGCTGGCACCAGCTAACAAAACAAGTCATTTCAGacatttgatttgtaaaatcagAATTGTTAGTATCACACATCAGTGCTTTTGTACATGTTTGATTTTATGAAACTTTGAGCCATTCAAAAAAAGCAACTACTTTAAAATTtagttctacttttttttttgctactttGTCTACAACTACTGTACACGTTCATTTAGCTGATCTGATCTGaatgtactttttgttttataCTGAGCCTATAAAATATTCATCACAACACTTCATGACACCTTAGAAAGACACTTAATATACATAAAGTGAACCATAATGTTTATAATCATGTATAGATGTTTTTATGATaattttaatgtactttttattGATACTTCAATGGAAAATATGGGCATTTATCAACTCACTTTGACAAGTTATTTGTGAAAAACTGGGAGAAATACCTCTCTTCTCTCATTCTGTCTCTTTCAAATTGCATTAGAGGCCAAGGTTGGTTGAATTTCTTTTTGTTGGTACAGGGGTCATTTTGGAGTCATAATTATTGCAATGTATTCTCTGTTTGTAATTCATATGAAATTAGTGTATttgtgattaaataataataatagtcatttttagatgtaaatatttttttattgaacaagAGAACATAAACTGATAAATACTTAAAGACTACcaaggtaaagtctagataggatacagctgcggatatgcATGTCAATATAGCattatttttatgacactgtatagcAATAATCCATATTTTTACagcactgtgatggttgggtttagggttagggtaggggtagacattaaaaatacaatttattgggtaattcaataaataacattaataatacttgatacaactactgtttttacgttactgtgatggttggggttatgGCTGGGGTGGGGgtggacattaataaaatacaattaatggaaaaTTTCCATTCAATTCGTTAACTTCTGGCTGCAACCATCTCTAGCAACCAACTACCAACCAGCCCTGGTCTCCTGTAATGGTAGCTATAcaatttattttgtactgttaAATGTGAATTTCTTGtataaaatgttgtttatgtttatctgtttgtttgtttgtttatttatttcaatataatttAGCACATGTTTCACTTAAATTCTTTCCCAGACTGTGGTTTTCAACCTGTGGGCTGCGGCCCCCCAGTGAACTGTGGCGGTATTGCAGGGGGTTGTTACCCACGGGTTCGTTTAAAAAGCACAgtgggtttggtttggtttagtggGCTTCGAATCAAAAAGTTTGGAAAACcacttaaaaataatgtaatacatttataatagtcTCAAAGAACAGGGTAAAGTTTAGAgaacataaataatacttggtacaatactgtttttacattactgtgacggttgggctAGGGGCAGTTaatcaaatacaataaattggaaatttaataaataatataaataattctcgttaacttccggccgcaatcgtatctgaacattttttattaacattaagtAGGACAAACCATTACGGCATATTTAACAATCCAGTACATAGTGTTAGTGTTGATATAAAAGTAGATGACTAGGGTCTTAGACAAGTAATACAAACGAGTCCAAGGCAGTGTCCAAGGCAGTGTCGGTTTAACCAATAAGATAGATAAGCGGCCGCTTACTATATATaactatttaataaactacataataaactataaataacattgttttctatcatattttggatggtgagagtcaaacaaatacatttttaatgtaactaaacaatatttaatataaattatattattattatat

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081107-62 Predicted to enable phosphoric diester hydrolase activity. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human GDPD2 (glycerophosphodiester phosphodiesterase domain containing 2).

Ensembl:

ensembl_id ENSDART00000186403

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016060 lncRNA downstream 952 33215366 ~ 33218418 (-) True XLOC_007985
TCONS_00015601 lncRNA downstream 169290 33048519 ~ 33050080 (-) True XLOC_007983
TCONS_00015597 lncRNA downstream 300536 32913680 ~ 32918834 (-) True XLOC_007979
TCONS_00015595 lncRNA downstream 335282 32882178 ~ 32884088 (-) True XLOC_007977
TCONS_00015586 lncRNA downstream 429782 32782904 ~ 32789588 (-) True XLOC_007973
TCONS_00016422 lncRNA upstream 37607 33298465 ~ 33307753 (-) False XLOC_007989
TCONS_00016423 lncRNA upstream 41162 33302020 ~ 33305342 (-) False XLOC_007989
TCONS_00015621 lncRNA upstream 41162 33302020 ~ 33308145 (-) True XLOC_007989
TCONS_00015623 lncRNA upstream 70920 33331778 ~ 33333951 (-) False XLOC_007990
TCONS_00015625 lncRNA upstream 72188 33333046 ~ 33334025 (-) False XLOC_007990
TCONS_00015608 mRNA downstream 952 33195619 ~ 33218418 (-) False XLOC_007985
TCONS_00015603 mRNA downstream 41373 33070284 ~ 33177997 (-) False XLOC_007984
TCONS_00015605 mRNA downstream 41435 33071560 ~ 33177935 (-) False XLOC_007984
TCONS_00015607 mRNA downstream 113936 33088733 ~ 33105434 (-) True XLOC_007984
TCONS_00015602 mRNA downstream 123453 33070284 ~ 33095917 (-) False XLOC_007984
TCONS_00015613 mRNA upstream 9529 33270387 ~ 33277743 (-) False XLOC_007987
TCONS_00015614 mRNA upstream 10569 33271427 ~ 33278084 (-) True XLOC_007987
TCONS_00015615 mRNA upstream 19860 33280718 ~ 33297287 (-) False XLOC_007988
TCONS_00015616 mRNA upstream 19860 33280718 ~ 33297318 (-) False XLOC_007988
TCONS_00015617 mRNA upstream 21564 33282422 ~ 33297314 (-) True XLOC_007988
TCONS_00015549 other downstream 1356653 31855592 ~ 31862717 (-) False XLOC_007959
TCONS_00015558 other downstream 1358543 31860750 ~ 31860827 (-) True XLOC_007962
TCONS_00015557 other downstream 1358900 31860408 ~ 31860470 (-) True XLOC_007961
TCONS_00015555 other downstream 1359864 31859430 ~ 31859506 (-) True XLOC_007960
TCONS_00015548 other downstream 1362034 31855592 ~ 31857336 (-) False XLOC_007959
TCONS_00015626 other upstream 72590 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015628 other upstream 79280 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015641 other upstream 212946 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other upstream 214962 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015693 other upstream 2131889 35392747 ~ 35405723 (-) True XLOC_008028

Expression Profile

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