RNA id: TCONS_00015613


Basic Information

Item Value
RNA id TCONS_00015613
length 2081
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_007987
representative False

Chromosome Information

Item Value
chromosome id NC_007125.7
NCBI id CM002898.2
chromosome length 52660232
location 33270387 ~ 33278084 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTTAATCTGACTGCGACTACAATAAGcgctgctcatactgaacagagACCAGAGATATCGAGTCTTGACACAAGCGACATCCCTCAGACGAATCTTGTACTTTCGCTGTGATTTTCATTGGTGAAATTGTCTTTTTAGAATGTCTCGCGGTTCAGGAATCCTTCCAGATGAATCCATGTTCGCTGAGTTCAAGAGACAATGCTTGTCTACGGAGAATTGGGTCAACAAGTATGATAAAAATGACATGGAGGTTTGGGTCGAGCAGGCCCCTTTATCTGCTTCGATTAACAACAAAGGAAACTACAGCAAAGTGCACAAAATCAGGTGTCAAATAAACATAAAGGATGTATCTGCTGCCACCATGTATGATGTTCTTCATGACGGCCAATACCGGAAAACATGGGACCCTACCATGCTGGAGAGTTTTGACATCGCCCGTCTGGCTCACAATGCTGATGTGGGCTACTATTCATGGATTTGTCCGAAACCATTGAAAAACAGAGATGTGGTGACCCTGCGCTCATGGCAGGCGTCTGAAAATGAGTATGTGATCATTAACTTCTCAGTGAAACATCCGaaatatccTCCACGAAAGGATCTCGTGAGGGCCGTTTCCCTAATGACCGGTTACCTGATTAAACCAACAGGGCCCCAAAGCTGCACTTTCACATACCTCTCACAAGCTGATCCTAAAGgGTCTCTTCCGAAGTGGGTTGTCAACAAAGCATCTCAGGTCCTGGCTCCAAAAGTGTTGAGAAGCGCTCATAAAGCTGGACAAAACTACCCTGCCTGGAAAGCAGCAAACTCTCCAGATCATAAGCCATGGCTGTACCCCATCCAGAGCGAACTGGCCATGATGGACCCCGCAGAGCTGTCCATCCAGCGCGGAGACTCGCTCGAGAACGTGGATGAGAGCTCGACCAGAGACGCTCAAGAGAACGAGGACAGCAGCTAAAAATGACTTCAaactgagaagaaaaaaaaaaaaagagcagacgGTTTGTAGCTCTGGTCCAGTTACCTCACACCACACTTCTATTCCTCCCTCCTGCTCACAGAGTAGATGTTTACAATCACAGCACATCCAATTATCCACACCAGAGGTTCTTACGCCATCAATGGTGCTCGAAAAAGAGGAATCACTATGCAGCTCTAATTCCTAATTTAGTTTAATACCATTCTGAAGGTGGTTCATTTTCGTGAATGACCTTTTTgctttgtaatttattattagatGGTTTGATGAAGCCACACCTAAGTGGTGTTAATGGCAGTTGAATAGCTTGTAAGTAGTCAAACATGTTTAATATTTCTTTTAAGTCTCCGTGTTTTGGGAGAGGCTCTCCTGCAATGCCATTCtttgtttgcatatttatatctGTGCGTCTTTTAAatgaggtgtgtgtttgtgcgtgtgatAATGAGTGACACCAAGCAACAATGAGAGAACCTGTGTTTTGTGGCCTTGTAATAAGAGCGAAGCAGACCAAAACATGAATTAGTATTACCTCAGGATTTATTACTTGAAGTGGTATTTGTTCAGTTGCCTGTAACAGGCAGAGGGATAGTGAAGAAACTGATTGATTGAGCTGTCCTGTGCTTTACACTTATGTCTTTAGAGTAGTTCAGCCAAAACTGACAATTTTATAATTTCCTCGCCCTTTACAggtgtttgactttcttttgttgaacacaaaagtcctttttagatagatagaatcctgtaaccattcactCAATGAATACCGTCTTCAGCATTCTgcaagatatcttcttttgtgttcaacagcataAAGAAATTCATAACGGTTTGTAACCATGTAAGTAAATGGTGAGGTagtttgtgggtgaactatctctttaatttgACAGCAGTGCATTCATGCAAAGGCATTTGTCAGGACAGTCGGGTTGCAAAGTTGCCTGTATTTATTACAGATGTTTTCATTCTGAGGAAGGATGGATGTGTAGATTTGAGTTTGGGAACTTGAATTTAATATGTATGAAGTCCTAACTCACTGAAGGGTAATATGGTTTTGTACATtcactattttaaataaattatattgttctTTTGAA

Function

GO:

id name namespace
GO:0008289 lipid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-963 Predicted to enable lipid binding activity.

Ensembl:

ensembl_id ENSDART00000048130

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016060 lncRNA downstream 51969 33215366 ~ 33218418 (-) True XLOC_007985
TCONS_00015601 lncRNA downstream 220307 33048519 ~ 33050080 (-) True XLOC_007983
TCONS_00015597 lncRNA downstream 351553 32913680 ~ 32918834 (-) True XLOC_007979
TCONS_00015595 lncRNA downstream 386299 32882178 ~ 32884088 (-) True XLOC_007977
TCONS_00015586 lncRNA downstream 480799 32782904 ~ 32789588 (-) True XLOC_007973
TCONS_00016422 lncRNA upstream 20722 33298465 ~ 33307753 (-) False XLOC_007989
TCONS_00016423 lncRNA upstream 24277 33302020 ~ 33305342 (-) False XLOC_007989
TCONS_00015621 lncRNA upstream 24277 33302020 ~ 33308145 (-) True XLOC_007989
TCONS_00015623 lncRNA upstream 54035 33331778 ~ 33333951 (-) False XLOC_007990
TCONS_00015625 lncRNA upstream 55303 33333046 ~ 33334025 (-) False XLOC_007990
TCONS_00015611 mRNA downstream 5319 33220100 ~ 33265068 (-) False XLOC_007986
TCONS_00015610 mRNA downstream 9529 33219370 ~ 33260858 (-) False XLOC_007986
TCONS_00015609 mRNA downstream 9529 33219370 ~ 33260858 (-) False XLOC_007986
TCONS_00015608 mRNA downstream 51969 33195619 ~ 33218418 (-) False XLOC_007985
TCONS_00015605 mRNA downstream 92452 33071560 ~ 33177935 (-) False XLOC_007984
TCONS_00015615 mRNA upstream 2975 33280718 ~ 33297287 (-) False XLOC_007988
TCONS_00015616 mRNA upstream 2975 33280718 ~ 33297318 (-) False XLOC_007988
TCONS_00015617 mRNA upstream 4679 33282422 ~ 33297314 (-) True XLOC_007988
TCONS_00015618 mRNA upstream 20038 33297781 ~ 33328031 (-) False XLOC_007989
TCONS_00015619 mRNA upstream 20722 33298465 ~ 33312407 (-) False XLOC_007989
TCONS_00015612 other downstream 38623 33220856 ~ 33231764 (-) True XLOC_007986
TCONS_00015549 other downstream 1407670 31855592 ~ 31862717 (-) False XLOC_007959
TCONS_00015558 other downstream 1409560 31860750 ~ 31860827 (-) True XLOC_007962
TCONS_00015557 other downstream 1409917 31860408 ~ 31860470 (-) True XLOC_007961
TCONS_00015555 other downstream 1410881 31859430 ~ 31859506 (-) True XLOC_007960
TCONS_00015626 other upstream 55705 33333448 ~ 33333581 (-) True XLOC_007990
TCONS_00015628 other upstream 62395 33340138 ~ 33344973 (-) True XLOC_007991
TCONS_00015641 other upstream 196061 33473804 ~ 33477987 (-) False XLOC_008000
TCONS_00015649 other upstream 198077 33475820 ~ 33477732 (-) False XLOC_008000
TCONS_00015693 other upstream 2115004 35392747 ~ 35405723 (-) True XLOC_008028

Expression Profile

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